Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0051 ATGCTATCGCTTCATTCGTGTGGATGCTGTTACCGTGTTTCCACCTCCAGAGCATTCAAATTTCAAACATCAACTTCATTCTCTGCTTCGAACTATAAATATCGTTTTAGCACTGCGAGAAGAGTTATAGCTAGTTCTGGTTCCGAAAAAGAGCAGAATTCAATTGAAGATAATAAGAGGAGTAACTATAGTGGGGTACGTTTGGAGGAAACGGTGGATAACGGAACTAGATCTGGAAAACTGAGACTCGATAATTGGATCTCGTCACGCATCAATGGAATCAGTAGAGCTCGCGTTCAATCAAGTATTAAAGCTGGACTCGTTCATGTCAATGGCCGTGTCGTTGATAAGTCTTCTTTCAATGTCAAAGCTGGGGATGAGGTCAAGTGCACCATCACAGAGTTGCAGCAGCTGAGGGCTGTGCCAGAAAATATACCTTTGGATATAGTTTATGAAGATGAACATGTGATAGTCATAAATAAACCTGCACACATGGTTGTGCATCCAGCACCTGGAAATACATCTGGCACGCTTGTCAATGGCATTCTTCACCATTGCAACCTTCCAAATTTTGAATTTTCTAATCAGGAAGCTCTTCCAGATACTGAAGATTCTGAAGATGAGTTCAAGAGCTTTGACTCTGATGCAAGTTTTCGTGAAGGGTTAGATTCTAGACTGTCTATGGCATCAATTCGCCCTGGGATTGTACACAGATTGGACAAAGGCACAAGTGGGTTACTAGTTGTTGCGAAGGTGTTTCACTTTCTTGCAAACTCAGAACTTATCACAATTCACAAAGATGAACATTCTCATATGAAATTGTCAGAACAATTCAAGCTGCGTACTATCAAGAGGGTGTATGTTAGTCTTACTGCTGGGGTACCGACTCCAACTACTGGGCGTATTGAAGTTCCAGTTGGCCGTGATCCTAATAACCGGCTTCGTATGACTGCTGTAGTTGGACCGGTTAGTTCTATGAAAGCCCGTCATGCTGCTAGTAGGTACAGGGTAATTGAGATACTTGCTGGGGGCAGCTGTGCATTGGTTGAGTGGAAGTTGGAAACTGGACGCACCCATCAGATCCGTGCACATGCTAAGTATCTGGGAGTTCCTCTGCTGGGTGATGAGGTCTATGGAGGGACGAAGAACATGGTCTTATCACTACTTCGGCCCAGAACAGCCCTTAGTTTGCATGGCCAGGTTGCACAAATGGTTTCTAGGCTAGATAGGCCTTGTCTTCATGCTTTGACACTGGGGTTTCAGCATCCCCATACCGGGGAGCAAGTGCATTTGTCATCTGATCCCCCGCTAGACTTTGATGAGATTCTGAGCCTGCTTCGCAGAATTGGCAGTGAGAGGATTTCTTTGTCAAAGCATCCAATTTCATCATAA 1392 0.4432 MLSLHSCGCCYRVSTSRAFKFQTSTSFSASNYKYRFSTARRVIASSGSEKEQNSIEDNKRSNYSGVRLEETVDNGTRSGKLRLDNWISSRINGISRARVQSSIKAGLVHVNGRVVDKSSFNVKAGDEVKCTITELQQLRAVPENIPLDIVYEDEHVIVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNFEFSNQEALPDTEDSEDEFKSFDSDASFREGLDSRLSMASIRPGIVHRLDKGTSGLLVVAKVFHFLANSELITIHKDEHSHMKLSEQFKLRTIKRVYVSLTAGVPTPTTGRIEVPVGRDPNNRLRMTAVVGPVSSMKARHAASRYRVIEILAGGSCALVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKNMVLSLLRPRTALSLHGQVAQMVSRLDRPCLHALTLGFQHPHTGEQVHLSSDPPLDFDEILSLLRRIGSERISLSKHPISS 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0051 463 Gene3D - 65 137 IPR036986 GO:0003723
Lal17g0051 463 ProSiteProfiles S4 RNA-binding domain profile. 81 154 - -
Lal17g0051 463 Pfam RNA pseudouridylate synthase 155 251 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lal17g0051 463 Pfam RNA pseudouridylate synthase 266 365 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lal17g0051 463 SUPERFAMILY Pseudouridine synthase 141 447 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lal17g0051 463 CDD S4 82 160 - -
Lal17g0051 463 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 79 252 - -
Lal17g0051 463 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 261 448 - -
Lal17g0051 463 PANTHER RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D 261 448 - -
Lal17g0051 463 PANTHER RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D 79 252 - -
Lal17g0051 463 SUPERFAMILY Alpha-L RNA-binding motif 80 168 - -
Lal17g0051 463 Gene3D Pseudouridine synthase 138 435 - -
Lal17g0051 463 SMART s4_6 81 146 IPR002942 GO:0003723
Lal17g0051 463 CDD PseudoU_synth_RluA_like 156 420 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lal17g0051 463 ProSitePatterns Rlu family of pseudouridine synthase signature. 236 250 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lal17g0051 463 Pfam S4 domain 82 128 IPR002942 GO:0003723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0051 K06180 - gmx:100810383 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0051 17 302379 308132 Lal17g0051 17 302379 308132 ECH