Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0045 ATGGCCTTCGCCACGAACGCTTTGATCTCTTCAAACTTCCTCGGTAGTAAAGTAGTTGCATCTCCCCCAATCCCCAAAATAACGAAATCACCCCTACCCCTTCCACTTTCGTTGAGATTTTTAAACATTCAAAATCAGCTTAACAATTCATCAAAACAATTTATATCCAAAACTTCAGAAGCTGCTTTAGCTGCTCTTATTCTCTCATCTCTCACTCTCACACCTCAACCTGCTTTAGCTGCTGATTTAATCCCTCCCCCTGTTATTGAATCTCAACAACCCACTAAACCTAACACTGCCACGTCATTATCCCCTTTCTCTCAAACAGCGCCTAACCCTCAATCACAACCTGACATCCCTGACGGAACCCAATGGCGTTACAGCGAGTTCTTAAACGCCGTCAAGAAGGGCAAGGTCGAGAGAGTCAGATTCACCAAAGACGGTTCTGCCCTTCAGTTAACCGCAGTTGACGGTCGCAGAGCCTCCGTTACTGTACCCAACGACCCTGACCTTATCGACATTTTAGCAAACAACGGCGTCGATATCTCCGTCTCCGAAGGAGAATCAAGTAACGGCGGCTTGTTCAATTTCATCGGAAACTTGTTATTCCCAATCCTCGCATTTGCAGGATTGTTCTTACTCTTCCGCAGAGCCCAGGGTGGGCCCGGCGGGCCTGGTGGACTTGGAGGGCCCATGGATTTCGGGCGCTCCAAGTCCAAATTCCAGGAAGTACCGGAAACTGGTGTTACCTTTGGTGACGTGGCTGGTGCTGATCAAGCTAAGTTAGAATTACAAGAAGTAGTTGATTTCCTTAAGAACCCTGATAAGTACACAGCTCTTGGCGCCAAAATTCCCAAAGGGTGTCTCCTAGTTGGACCACCGGGAACCGGGAAAACCTTATTGGCAAGAGCAGTAGCCGGTGAAGCTGGGACTCCTTTCTTTTCATGTGCGGCTTCGGAATTTGTGGAACTGTTTGTTGGCGTTGGTGCTTCAAGGGTTAGAGATTTGTTTGAAAAGGCGAAGTCCAAAGCGCCTTGCATTGTTTTTATAGATGAAATTGATGCTGTGGGAAGACAAAGGGGTGCAGGTATGGGAGGTGGGAATGATGAGAGGGAACAAACTATTAACCAGTTATTGACCGAGATGGATGGCTTTTCTGGTAATTCTGGTGTTATAGTTTTGGCTGCCACCAACAGACCTGATGTTCTTGATTCCGCCTTGTTAAGGCCGGGTCGGTTTGATAGGCAGGTTACTGTTGATAGACCTGATGTTGCGGGAAGAGTTAAGATCCTTCAGGTGCATTCCAGAGGAAAAGCGCTTGCTAAGGATGTTGATTTTGAAAAGGTTGCAAGGAGGACACCTGGATTTACAGGGGCTGATCTGCAAAACTTGATGAATGAAGCCGCGATTCTTGCCGCAAGGCGTGACTTCAAGGAGATAAGTAAAGATGAGATATCTGATGCACTTGAAAGGATCATTGCTGGACCTGAAAAAAAGAATGCTGTTGTCTCTGATGATAAGAAGAAATTGGTAGCCTATCATGAGGCTGGTCATGCTCTAGTAGGTGCTTTGATGCCTGAATATGACCCTGTAGCCAAGATATCAATAATTCCCCGTGGCCAAGCTGGCGGTCTCACATTTTTTGCTCCGAGCGAAGAGAGGCTTGAGTCTGGATTGTACAGTAGAAGCTACTTGGAAAATCAGATGGCAGTTGCTCTGGGTGGAAGAGTTGCTGAAGAGGTAATTTTTGGCCGGGAAAATGTCACCACCGGAGCATCAAACGACTTTATGCAAGTTTCACGAGTGGCAAGGCAGATGGTTGAGAGATTTGGGTTCAGTAAAAAAATTGGACAAATTGCCATTGGCGGACCTGGTGGAAATCCATTCTTGGGTCAATCGATGTCAACACAAAAAGATTACTCCATGGCAACTGCAGACATAGTTGATGCGGAAGTAAGGGAGCTAGTAGAGAAAGCCTATTCTAGGGCAACAGAAATCATCACCACTCAAATTGACATCCTTCACAAGCTTGCTCAACTTCTCATAGAAAAAGAAACTGTGGACGGTGAAGAGTTTATGAGTCTGTTCATTGATGGAAAAGCCGAATTATATGTTGCATAG 2121 0.4606 MAFATNALISSNFLGSKVVASPPIPKITKSPLPLPLSLRFLNIQNQLNNSSKQFISKTSEAALAALILSSLTLTPQPALAADLIPPPVIESQQPTKPNTATSLSPFSQTAPNPQSQPDIPDGTQWRYSEFLNAVKKGKVERVRFTKDGSALQLTAVDGRRASVTVPNDPDLIDILANNGVDISVSEGESSNGGLFNFIGNLLFPILAFAGLFLLFRRAQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFGDVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGTPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKVARRTPGFTGADLQNLMNEAAILAARRDFKEISKDEISDALERIIAGPEKKNAVVSDDKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGRENVTTGASNDFMQVSRVARQMVERFGFSKKIGQIAIGGPGGNPFLGQSMSTQKDYSMATADIVDAEVRELVEKAYSRATEIITTQIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELYVA 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0045 706 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 195 695 IPR005936 GO:0004176|GO:0004222|GO:0016020
Lal17g0045 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 492 IPR027417 -
Lal17g0045 706 Gene3D - 239 421 IPR027417 -
Lal17g0045 706 Pfam Peptidase family M41 502 695 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lal17g0045 706 MobiDBLite consensus disorder prediction 93 122 - -
Lal17g0045 706 SUPERFAMILY FtsH protease domain-like 502 696 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lal17g0045 706 Gene3D - 422 497 - -
Lal17g0045 706 PANTHER METALLOPROTEASE M41 FTSH 57 698 - -
Lal17g0045 706 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED 57 698 - -
Lal17g0045 706 MobiDBLite consensus disorder prediction 88 122 - -
Lal17g0045 706 ProSitePatterns AAA-protein family signature. 391 409 IPR003960 GO:0005524|GO:0016887
Lal17g0045 706 CDD AAA 255 420 - -
Lal17g0045 706 Pfam AAA+ lid domain 443 486 IPR041569 -
Lal17g0045 706 SMART AAA_5 284 423 IPR003593 -
Lal17g0045 706 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 6 706 IPR005936 GO:0004176|GO:0004222|GO:0016020
Lal17g0045 706 Gene3D - 120 191 - -
Lal17g0045 706 Gene3D Peptidase M41 498 701 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lal17g0045 706 Pfam ATPase family associated with various cellular activities (AAA) 289 420 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0045 Lal-Chr17 264158 269854 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0045 245 697 Miscellaneous Gene Families AT5G53170 48.899 1.16e-134 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0045 K03798 - qsu:111999978 1127.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0045 17 264158 269854 Lal17g0045 17 264158 269854 ECH