Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0040 ATGAGCAGGAGCTTGGGAATACCAGTGAAGCTACTCCATGAGGCGTCTGGTCATGTGGTGACCGTGGAGCTTAAGAGCGGAGAACTTTACAGAGGCAGCATGATCGAGTGTGAGGACAACTGGAACTGTCAACTCGAGAGCATTACCTACACTGCCAAGGATGGAAAAACATCGCAGCTTGAGCATGTATTCATTCGAGGGAGCAAAGTCAGATTTATGGTCATCCCTGACATGTTGAAGAATGCTCCAATGTTTAAGCGTTTGGATGCAAGAGTCAAGGGCAAGGGTGCATCACTTGGTGTTGGTAGGGGCAGAGCAGTTGCAATGCGAGCTAAGGCTCAAGCCGCTGGACGTGGAGCTGCACCTGGAAGGGGTGCACCACCTGTGCGGAGGTGA 396 0.5177 MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMIECEDNWNCQLESITYTAKDGKTSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARVKGKGASLGVGRGRAVAMRAKAQAAGRGAAPGRGAPPVRR 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0040 131 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3 1 128 - -
Lal17g0040 131 Pfam LSM domain 11 74 IPR001163 -
Lal17g0040 131 SUPERFAMILY Sm-like ribonucleoproteins 8 124 IPR010920 -
Lal17g0040 131 SMART Sm3 10 75 IPR001163 -
Lal17g0040 131 Gene3D - 3 86 - -
Lal17g0040 131 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 1 128 IPR027141 GO:0006396
Lal17g0040 131 CDD Sm_D3 8 77 IPR034099 GO:0000387|GO:0005681
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0040 Lal-Chr17 248246 250820 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0040 K11088 - gmx:100305856 208.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0040 17 248246 250820 Lal17g0040 17 248246 250820 ECH