Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0035 ATGGAGCTTCTTCGCTTAGGGTTGCTAACCTTCATATTTCTCTTACAGGCATGTTTAATTTTATCATTAGCAAAGACAGATAATTTGCCTACAAGCCTTCTTTTGAAATCCAGTGCTACAACGTCAGGGGAAAAGCATTCTGAGAATTATTGTGCAATGTATGACATTTGTGGAAAGCGCAGTGATGATAAAGTATTGAACTGTCCGTTTGGTTCCCCAGCTGTGAAGCCAGATGATTTGCTCTCATCAAAGATCCAAAGTTTGTGTCCAACAATTACTGGGAATGTTTGTTGTACAGAAGCTCAGTTTGACACATTAAAGACGCAAGTCCAACAGGCAATTCCTTTTCTTGTAGGTTGTCCTGCATGTCTAAGAAACTTTTTGAACCTGTTCTGTGAGCTTACATGTTCTCCAAATCAGAGTTTATTTATCAATGTGACATCAGTTGGCAAGGCTTCAAACTTCAACTCTTACAATTCTCAGGTTGGTGGCAATTCAACAGTTGGAGGGATTGATTATTTTGTAACTGATGCTTTTGGTGAAGGGTTATATGAGTCCTGCAAGGAAGTAAAGTTCGGAACCATGAATTCTCGAGCTCTACAATTTCTTGGTGCTGGTGCTCAAAATTTTGAAGAGTGGTTTGCCTTTATTGGTAGAAAAGCAGCCCCGAATAGTGCTGGTTCACCATTTGCAATTATGTTCCATCCAAATGCAACCAAGTCCTCTGGCATGAAACCTATGAATGTTTCAACTTATTCATGTGGTGATATTTCTCTTGGCTGCTCTTGTGGTGATTGTCCTTCATCTTCGATGTGCTCTAATTCACCTTCAACGGCCACCCATAAGAAGGATTCATGCTCCATCAAAGTTGGGTCTTTAACGGTGAAGTGTGTTGATTTGATTTTAACAGTATTATACATCATACTGATTTCCGTGTTCTTGGGTTGGGGATTGTGTCATCATCGGATTAGGAAAAGAAATCCGACATACAGAACAAGACCAGCTTCTAATATCGGTAGTGGTGGTGTGTTGCATTCTCTTGATGGGGAGAAGGATGACAATCTCCCAATGCAGATGATGCAAGATGTTGCACAAAACATAAATGGGGTCCGGCTCTCAGCAGTGCAAGGATACATGTCAAATTTTTACAGGAAATATGGATTATATGTAGCTAAAAATCCAACTATGGTTTTGTCTTCATCTTTGGCTATAGTTCTTCTTCTCTGTCTAGGTCTAATTCGATTCAAGGTCGAAACGCGGCCTGAGAAGCTCTGGGTAGGACCTGGGAGTAAAGCAGCACAAGAGAAACACTTTTTTGATAGCCATCTTGCTCCATTTTACAGAATTGAACAGCTCATACTGGCAACAGTTCCAGATCCCGTGAATGATACATCACCGAAAATTGTGTCAGAGGAGAACATTAAGTTCCTATTTGAAATTCAAAAAAAGGTTGATGCAATTCGTGCTAATTATTCTGGCTTGATGGTATCTCTTCAAGACATCTGTATGAAGCCATTGGACAAAGATTGTGCCACTCAAAGTGTCCTGCAGTACTTCAAAATGGAACCGAAAAATTTAGATGATTACGGAGGAGTTGATCATCTTTATTACTGTTTTGAGCATTATACCTCAGCAGACCAATGTATGAGTGCATTTAAAGCTCCTCTTGATCCAAGCACTGTATTAGGAGGTTTCTCTGGGATTGATTATTCTGCGGCCTCTGCATTTATCGTAACCTATCCAGTAAATAATGCTATTGATGAAGAAGGTAATGAAACCGCTAAGGCAATTGCTTGGGAGAAGACCTTTATTCAGTTAGTGAAGGATGAGCTTTTACCAATGGCACTATCACGAAATTTGACGCTTACTTTTTCCTCTGAAAGCTCGATCGAGGAAGAGTTAAAAAGAGAAAGTACTGCGGATGCTATTACTATACTGATTAGCTATCTTGTGATGTTTGCTTATATATCTCTTACTTTGGGGGATACATCACGTCTTTCTTCTTTCTATATTTCATCTAAGGTTTTGCTTGGTCTTGCAGGAGTAATGCTTGTTATGCTGTCTGTCCTTGGATCAGTTGGAATTTTTAGTGCCCTTGGTGTAAAATCTACACTGATCATCATGGAAGTTATCCCATTTCTTGTTCTAGCTGTTGGTGTGGATAATATGTGTATACTTGTTCATGCTGTGAAAAGGCAACAGCTGGATTTGCCTTTAGAAAGACGAATGAGCAATGCGCTTGTGGAAGTTGGGCCATCAATTACATTGGCTAGTCTATCAGAGGTTTTAGCATTTGCAGTTGGAAGCTTTATTTCAATGCCTGCATGCCGTGTGTTCTCCATGTTTGCTGCATTGGCTGTTCTCTTGGACTTTCTCCTGCAAATTACTGCTTTTGTTGCTCTGATAGTTCTCGACTCTTCGCGAGCAGAGGATAAGAGAGTCGATTGTTTACCATGCATGAAAGTGCATCCAATGCATGTGGATTTTGATAAAGGTGTTGGACAAAGTAAACCCGGTTTCTTGGCTAGATATATGAAGGAGGTCCATGCACCCATTCTGAGTATTTGGGGAGTAAAACTAGTTGTCATTGCTATTTTCACGGCACTTACATTGGCTAGCATCGCATTAAGCACTAGAATTGAACCTGGTTTGGAGCAGGACATTGTTCTTCCTCGAGACTCGTATCTTCAGGGGTATTTCAAAAATATTTCAGAATATCTCAGGATTGGACCACCTTTGTATTTTGTTGTAAAGAACTATAACTACAGCTCTGAATCAATGCATACAAATCAGCTTTGCTCCATAAGCCAATGCAACTCAACTTCCCTTTTAAATGAGATTGCTAGAGCAGCCCTAGTACCAGATACAAGTTATATTGCCAAGCCAGCTGCTTCGTGGCTTGATGATTTTCTTGTGTGGGTATCTCCGGAAGCATTTGGGTGCTGCAGAAAGTTCATGGATGGGAGTTATTGCCCCCCGGATGATCAGCCTCCTTGCTGTGCTGTTGGTGAAGGTTCTTGTGTTTCAGATGGAGTATGTAAAGATTGCACAACGTGTTTCCGTCACTCAGATCTCCACAATGACCGTCCATCTACGGCAGAGTTTTGGCAGAAACTGCCATGGTTTCTTAGTGCTCTGCCTTCTGCTGATTGTGCAAAAGGTGGTCATGGTGCTTACACAAGCAGTGTTGAACTGAAAGGCTATGAGAGTGGCATTATACAAGCATCATCATTCCGTACATATCATACCCCCCTCAACAAGCAGGTTGACTATGTTAATTCCATGAGGGCTGCTCGAGAGTTTTGTTCAAGAGTTTCTGATTCTTTGAAGATTGAGATCTTCCCTTATTCAGTGTTTTATATGTTTTTCGAGCAATACCTAAATATATGGAAGACTGCACTGGTCAACATTGCTATAGCTATTGGTGCTGTGTTTATTGTGTGCTTGGTTATCACATGCAGTTTATGGAGTTCATCAATCATTTTGTTGGTGTTGGTGATGATTGTTGTTGATCTTATGGGGGTGATGGCCATTCTGAATATCCAGTTGAATGCTGTTTCGGTGGTCAACCTTGTTATGTCAGTGGGCATTGCTGTTGAGTTTTGTGTGCACATGACTCATTCATTTACTGTAGCAAGTGGAGACAAAGATCAACGAGTGAAGCAGGCACTGGGTACAATGGGAGCTTCAGTCTTCAGTGGTATCACATTAACAAAACTGGTTGGAGTTATTGTTCTTTGTTTCTCAAGGACAGAAGTTTTTGTGATTTATTACTTTCAAATGTACTTGTCGTTAGTACTACTTGGCTTCTTGCACGGACTTGTTTTCTTACCGGTGGCATTAAGCATCTTTGGTCCACCTTCAAGATGTATAAACAATGAGGACGGGGAAGATAGTTCATCAACTTCTTCATAG 3915 0.4074 MELLRLGLLTFIFLLQACLILSLAKTDNLPTSLLLKSSATTSGEKHSENYCAMYDICGKRSDDKVLNCPFGSPAVKPDDLLSSKIQSLCPTITGNVCCTEAQFDTLKTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVGKASNFNSYNSQVGGNSTVGGIDYFVTDAFGEGLYESCKEVKFGTMNSRALQFLGAGAQNFEEWFAFIGRKAAPNSAGSPFAIMFHPNATKSSGMKPMNVSTYSCGDISLGCSCGDCPSSSMCSNSPSTATHKKDSCSIKVGSLTVKCVDLILTVLYIILISVFLGWGLCHHRIRKRNPTYRTRPASNIGSGGVLHSLDGEKDDNLPMQMMQDVAQNINGVRLSAVQGYMSNFYRKYGLYVAKNPTMVLSSSLAIVLLLCLGLIRFKVETRPEKLWVGPGSKAAQEKHFFDSHLAPFYRIEQLILATVPDPVNDTSPKIVSEENIKFLFEIQKKVDAIRANYSGLMVSLQDICMKPLDKDCATQSVLQYFKMEPKNLDDYGGVDHLYYCFEHYTSADQCMSAFKAPLDPSTVLGGFSGIDYSAASAFIVTYPVNNAIDEEGNETAKAIAWEKTFIQLVKDELLPMALSRNLTLTFSSESSIEEELKRESTADAITILISYLVMFAYISLTLGDTSRLSSFYISSKVLLGLAGVMLVMLSVLGSVGIFSALGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLDLPLERRMSNALVEVGPSITLASLSEVLAFAVGSFISMPACRVFSMFAALAVLLDFLLQITAFVALIVLDSSRAEDKRVDCLPCMKVHPMHVDFDKGVGQSKPGFLARYMKEVHAPILSIWGVKLVVIAIFTALTLASIALSTRIEPGLEQDIVLPRDSYLQGYFKNISEYLRIGPPLYFVVKNYNYSSESMHTNQLCSISQCNSTSLLNEIARAALVPDTSYIAKPAASWLDDFLVWVSPEAFGCCRKFMDGSYCPPDDQPPCCAVGEGSCVSDGVCKDCTTCFRHSDLHNDRPSTAEFWQKLPWFLSALPSADCAKGGHGAYTSSVELKGYESGIIQASSFRTYHTPLNKQVDYVNSMRAAREFCSRVSDSLKIEIFPYSVFYMFFEQYLNIWKTALVNIAIAIGAVFIVCLVITCSLWSSSIILLVLVMIVVDLMGVMAILNIQLNAVSVVNLVMSVGIAVEFCVHMTHSFTVASGDKDQRVKQALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVIYYFQMYLSLVLLGFLHGLVFLPVALSIFGPPSRCINNEDGEDSSSTSS 1304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0035 1304 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 8 1303 - -
Lal17g0035 1304 PANTHER PATCHED FAMILY PROTEIN 8 1303 - -
Lal17g0035 1304 ProSiteProfiles Sterol-sensing domain (SSD) profile. 641 804 IPR000731 -
Lal17g0035 1304 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 1095 1285 - -
Lal17g0035 1304 Pfam Patched family 466 919 IPR003392 GO:0016021
Lal17g0035 1304 Pfam Patched family 1070 1284 IPR003392 GO:0016021
Lal17g0035 1304 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 598 804 - -
Lal17g0035 1304 Gene3D Multidrug efflux transporter AcrB transmembrane domain 552 814 - -
Lal17g0035 1304 Gene3D Multidrug efflux transporter AcrB transmembrane domain 1092 1289 - -
Lal17g0035 1304 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Lal17g0035 1304 Pfam Niemann-Pick C1 N terminus 49 288 IPR032190 -
Lal17g0035 1304 TIGRFAM 2A060601: Niemann-Pick C type protein family 51 1285 IPR004765 GO:0005319|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0035 Lal-Chr17 204538 218606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0035 45 1304 Miscellaneous Gene Families AT1G42470 72.698 0.0 1852
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0035 K12385 - gmx:100813262 2125.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0035 17 204538 218606 Lal17g0035 17 204538 218606 ECH