Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0013 ATGGTTGTTGTAGCTGCGATGAATGGAGTAGGTCTCACCACCACTACCACTTCCTTAGGGTTTTCTAGAAGAACAAGAACAAGAACAACTACAACCTTTTCTCATTCTCCTTCAATCACAATGACTGTTTCCATCGACAACAACAAGAAGAACCTCACTCTCACCAAATCACAAGAAGCTTTCACCGCTGCAAAGGAATTGATGCCTGGAGGTGTAAACTCTCCAGTTCGAGCCTTTAAATCAGTGGGTGGACAACCCATTGTGATTGATTCAGTTAAAGGCTCTCATTTGACTGACATTGATGGCAATCACTACATTGACTACGTTGGTTCTTGGGGTCCTGCCATTATTGGTCATGCTGATGATCAGGTCCTTGCAGCTCTATCTGAAACAATGAGAAAAGGAACCAGCTTTGGTGCTCCTTGTCTGCTCGAAAACACTTTAGCAGAGGCCGTTATCTCTGCAGTACCAAGCATTCAAATGGTTCGTTTTGTTAACTCAGGCACAGAAGCTTGCATGGCTGTGCTCCGCCTTGCTCGTGCCTTTACTGGAAATGAGAAGATCATCAAGTTTGAAGGCTGTTACCATGGCCATGCCGATCCTTTTCTTGTTAAGGCCGGTAGTGGTGTTGCCACCTTAGGACTTCCTGACTCACCTGGCGTTCCTAAAGGTGCCACTTTTGAAACCCTTACAGCCCCTTACAATGACTTCTCAGCTGTTGAGAAGCTCTTTGAGTCTAACAAAGGAGAGATAGCAGCGGTTATCATTGAACCAGTTGTTGGAAACTCTGGTTTCATTACTCCTAAACCTGATTTTCTCACCTTCTTACGCAAAATCACCAAGGAGAACAACTCCCTTCTCATCTTTGATGAAGTTATGACTGGATTTCGTTTGTCATATGGAGGTGCTCAAGAATATTTTGGTATAACTCCTGATTTAACAACTCTAGGAAAAATCATCGGTGGGGGTCTGCCAGTAGGTGCTTATGGAGGGAGGAAGGATATTATGCAGATGGTGGCCCCAGCTGGACCTATGTACCAGGGTGGAACCTTGAGCGGGAACCCTTTGGCCATGACTGCTGGAATACAAACTTTGAAGCGTATTAAGGAGCCAGGAACCTATGAATACTTGGACAAAATTACAGGTGAGCTTGTTCAGGGCATCATCAATGCTGGGAAGAGGGCGGGCCACGCAATATGTGGAGGGCATATAAGTGGAATGTTTGGGTTTTTCTTCACAGAAGGACCTGTTTACAACTTCACAGATGCCAAAAAGAGTGATGCAGATAAGTTTGCTAGGTTCTTCTGGGGAATGTTAGCGGAAGGTGTGTATTTAGCACCTTCACAGTTTGAGGCTGGGTTCACCAGTTTGGCGCATACTTCCGATGATATAAAAAAGACAATAGCTGCTGCTGAGAAGGTTTTCAGGGAGATCTAA 1437 0.4495 MVVVAAMNGVGLTTTTTSLGFSRRTRTRTTTTFSHSPSITMTVSIDNNKKNLTLTKSQEAFTAAKELMPGGVNSPVRAFKSVGGQPIVIDSVKGSHLTDIDGNHYIDYVGSWGPAIIGHADDQVLAALSETMRKGTSFGAPCLLENTLAEAVISAVPSIQMVRFVNSGTEACMAVLRLARAFTGNEKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATFETLTAPYNDFSAVEKLFESNKGEIAAVIIEPVVGNSGFITPKPDFLTFLRKITKENNSLLIFDEVMTGFRLSYGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRKDIMQMVAPAGPMYQGGTLSGNPLAMTAGIQTLKRIKEPGTYEYLDKITGELVQGIINAGKRAGHAICGGHISGMFGFFFTEGPVYNFTDAKKSDADKFARFFWGMLAEGVYLAPSQFEAGFTSLAHTSDDIKKTIAAAEKVFREI 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0013 478 PANTHER BNAA09G06670D PROTEIN 21 476 - -
Lal17g0013 478 SUPERFAMILY PLP-dependent transferases 54 477 IPR015424 -
Lal17g0013 478 CDD OAT_like 61 475 IPR005814 GO:0008483|GO:0030170
Lal17g0013 478 PANTHER GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE 21 476 - -
Lal17g0013 478 Gene3D Aspartate Aminotransferase, domain 1 59 471 IPR015422 GO:0003824
Lal17g0013 478 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 287 323 IPR005814 GO:0008483|GO:0030170
Lal17g0013 478 Pfam Aminotransferase class-III 86 394 IPR005814 GO:0008483|GO:0030170
Lal17g0013 478 Hamap Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 56 478 IPR004639 GO:0033014|GO:0042286
Lal17g0013 478 Gene3D - 122 370 IPR015421 GO:0003824
Lal17g0013 478 TIGRFAM hemL: glutamate-1-semialdehyde-2,1-aminomutase 56 477 IPR004639 GO:0033014|GO:0042286
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0013 Lal-Chr17 60777 62738 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0013 K01845 - gmx:100790574 793.497