Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0009 ATGGAAGGTGTGGCGGTTGTAGTAGTTCCGCATCTCAAATTCAACCAATTTCAATTCTTTCCGATTCATCATAATTCAAAGTTTTGTAGAGCAGCACCGTGTGGAGTACCCTCTCTTACTTTCAAACTCAAACTCAAACTCAAACTCAAACTCAAACAACAACACCATCACGCTTTTCCTCCCATTTCCACAGCAACTGATGCTGTTTCCGAAGAAGATAGTGACAATAATAATAATAACAGTGGGGATTCCATACGGCGAAGATTTCTGAAATTTTATGAATCCCGTGGTCACAAAGTGCTACCAAGCGCTTCTCTTGTCCCAGATGATCCCACTGTTCTACTCACTATAGCTGGTATGCTTCAATTTAAACCTATTTTCTTAGGCAACATTCCCTCAAAAGTACCTTGTGCTACTACTTCCCAACGCTGCATTCGCACTAATGATATTCTCAATGTTGGTCTCACTTCTCGTCATCATACCTTTTTTGAGATGCTTGGTAACTTCAGCTTCGGTGATTACTTCAAAAAACAGGCTATCCTATGGGCCTGGGAACTTTCAACCCTTGAGTTTGGCTTGCCACCTCACAGATTATGGATTAGTGTTTATCAAAATGACGATGATGCTTTTCACATTTGGTCTAATCAGGTGGGTGTTCCAGTTGAGCGTATAAAGAGGTTGGGTGAAGAGGACAACTTCTGGACAAGTGGAGTCACAGGTCCTTGTGGTCCTTGCTCTGAAATTTATTATGATTTTCATCCCGAGAGGGGATATGCAGATGCCGATCTTGGTGATGATACTCGGTTTATAGAGTTCTACAATCTAGTATTCATGCAATACAACAAAAACGACGATGGCTCTCTTGAACCTCTAAAGCAGAAGAACATAGATACTGGCCTTGGACTTGAGCGTATGGCCCGTATCCTTCAAAAGGTTCCAAATAACTATGAAACGGACTTGATTTTCCCTATCATAGAGAAGGCCTCTGAGTTAGCAAATGTTTCATATGACACCGCTGATGATCATACAAAGAGGAATCTGAAAATTATAGGAGATCACATGCGTGCCATTGTATTTCTCATCTCTGATGGGGTTGTCCCATCAAATGTTGGAAGAGGTTATGTAGTTCGGAGGCTTATCAGAAGGGTTGTTCGTACAGGCAGGTTGCTTGGTATAAAAGGTGATGGTGGGGGAGACCTTGAAGGTACATTTTTACCAATTATTGCTGAGAAAGTCATGGAATTAAGCACACATATCGATTCTGATGTGAAGAAAAGGGCACCACGTATCCTTGAGGAGTTGATGAGGGAAGAACTTCGGTTTGTGCAGACACTGGAGAGAGGAGAAAAGTTGCTTGAGGAGAAACTCGCTGCTGCTTTATGGAATGCGGAAAACAATAAAACCGACCCTTGCTTGGCTGGCGAAGATGTGTTTCTGTTGTATGATACTTATGGATACCCTATGGAAATAACAAAAGAAGTGGCTGAAGAACGTGGTGTGAGTATTGATATGAAAGGTTTTGATATTGAAATGGAGAAGCAAAGGCGTCAATCTCAAGCCGCACACAATACTGTCAAACTCGCCATGGGAAATGGGGCAAATATGGCAGACAATGTGCCTGACACTGAATTTATTGGATACAACAACCTTTATGCTAAAGCAATAGTACAAAGCCTAGTGGTAAATGGTGATCCAGCTTTACAGGCTAGTGAAGGGAGTGATGTGGAAGTTTTGCTGAACAAGACTCCATTTTATGCTGAATCAGGGGGACAAATTGGAGATAATGGTTTTCTATATATTGCTGAAGGTGAGAGTCAACCAAAAGCTGTTGTGGAGATAATAGATGTTCAGAAGTCTTTAGGTAACATATTTGTTCACAAGGGCATTGTCCGAAAGGGAGTCGTAGAGGTTGGCAAAGAAGTGAATGCAGCAGTGGATGTAAAGCTAAGGCAGCGTGCCAAGGTGCAAGAACTGTTGGCTTCTCATTTCATTTACTTGTCTGGTGAATCTTCCCCTGTTCATCATACTGCTACTCATTTATTACAAGCTGCACTTAAAAAAGTTATTGGTCAAGAGACCTCACAAGCTGGTTCCTTGGTGTCATTTGATCGCCTCAGATTTGATTTCAACTTTCACCGATCACTTCTTGACAGTGAGCATGCAGAAATTGAAGGGCTAATCAATGGGTGGATTCAGGAAGCTACGGTTCTTGAAACCAAAGTAATGCCTCTTGATGATGCAAAAAGAGCTGGAGCTATTGCAATGTTTGGAGAAAAATATGGAGAAGAGGTACGTGTTGTAGAGGTTCCTGGTGTTTCAATGGAACTATGCGGTGGGACTCATGTCAGCAATACTTCTGAAATTCGTGGTTTTAAGATAATATCAGAGCAAGGTATTGCATCTGGAATCAGGCGTATTGAAGCTGTAGCTGGGGAAGCTTTCATTGAATATGTCAATGCCCGAGACTTTTATCTGAAGCAGCTATGTTCCACTCTTAAAGTTAAAGCTGATGAGGTGACAACAAGGATAGAAAATCTCCTAGAGGAGTTACGGGTAGCGCGAAATGAAAATCTTTGTCTACGTGCAAAAGCAGCAGTCTTCAAAGCTTCAGTTATTGCAAAAAAAGCATTGTTGGTTGGAAATTCAAAACAGTACAGGGTGCTAGTTGAGTACGTGGATGATGTTGATGCTGAGTCACTTAAGAGTGCTGCAGAATATTTAATTGAAACACTAACAGATCCAGCAGCTGTTGTACTAGGCTCATGTCCAGGTGAAGGGAAGGTCAGTCTGGTGGCTGCTTTTACTCCAGGGGTGGTTGATAAGGGAATTCAGGCCGGCAAATTTATTGGACAGATAGCAAAGTTATGTGGCGGCGGTGGGGGAGGAAGGCCCAATTTTGCTCAGGCTGGTGGGAGGAAGCCTGAAAATTTGGCAAGTGCCCTTGAGAAGGCTCAATCAGAGCTTGTAGCTGCTCTATCTGAGAAAGGAAACTGA 2994 0.4238 MEGVAVVVVPHLKFNQFQFFPIHHNSKFCRAAPCGVPSLTFKLKLKLKLKLKQQHHHAFPPISTATDAVSEEDSDNNNNNSGDSIRRRFLKFYESRGHKVLPSASLVPDDPTVLLTIAGMLQFKPIFLGNIPSKVPCATTSQRCIRTNDILNVGLTSRHHTFFEMLGNFSFGDYFKKQAILWAWELSTLEFGLPPHRLWISVYQNDDDAFHIWSNQVGVPVERIKRLGEEDNFWTSGVTGPCGPCSEIYYDFHPERGYADADLGDDTRFIEFYNLVFMQYNKNDDGSLEPLKQKNIDTGLGLERMARILQKVPNNYETDLIFPIIEKASELANVSYDTADDHTKRNLKIIGDHMRAIVFLISDGVVPSNVGRGYVVRRLIRRVVRTGRLLGIKGDGGGDLEGTFLPIIAEKVMELSTHIDSDVKKRAPRILEELMREELRFVQTLERGEKLLEEKLAAALWNAENNKTDPCLAGEDVFLLYDTYGYPMEITKEVAEERGVSIDMKGFDIEMEKQRRQSQAAHNTVKLAMGNGANMADNVPDTEFIGYNNLYAKAIVQSLVVNGDPALQASEGSDVEVLLNKTPFYAESGGQIGDNGFLYIAEGESQPKAVVEIIDVQKSLGNIFVHKGIVRKGVVEVGKEVNAAVDVKLRQRAKVQELLASHFIYLSGESSPVHHTATHLLQAALKKVIGQETSQAGSLVSFDRLRFDFNFHRSLLDSEHAEIEGLINGWIQEATVLETKVMPLDDAKRAGAIAMFGEKYGEEVRVVEVPGVSMELCGGTHVSNTSEIRGFKIISEQGIASGIRRIEAVAGEAFIEYVNARDFYLKQLCSTLKVKADEVTTRIENLLEELRVARNENLCLRAKAAVFKASVIAKKALLVGNSKQYRVLVEYVDDVDAESLKSAAEYLIETLTDPAAVVLGSCPGEGKVSLVAAFTPGVVDKGIQAGKFIGQIAKLCGGGGGGRPNFAQAGGRKPENLASALEKAQSELVAALSEKGN 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0009 997 Gene3D - 880 988 - -
Lal17g0009 997 Gene3D - 674 809 - -
Lal17g0009 997 Hamap Alanine--tRNA ligase [alaS]. 81 992 IPR023033 GO:0004813
Lal17g0009 997 PRINTS Alanyl-tRNA synthetase signature 148 159 IPR002318 GO:0000166|GO:0005737
Lal17g0009 997 PRINTS Alanyl-tRNA synthetase signature 270 281 IPR002318 GO:0000166|GO:0005737
Lal17g0009 997 PRINTS Alanyl-tRNA synthetase signature 297 310 IPR002318 GO:0000166|GO:0005737
Lal17g0009 997 PRINTS Alanyl-tRNA synthetase signature 348 364 IPR002318 GO:0000166|GO:0005737
Lal17g0009 997 PRINTS Alanyl-tRNA synthetase signature 372 385 IPR002318 GO:0000166|GO:0005737
Lal17g0009 997 Coils Coil 981 997 - -
Lal17g0009 997 Coils Coil 829 863 - -
Lal17g0009 997 Pfam tRNA synthetases class II (A) 85 647 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Lal17g0009 997 Gene3D - 531 645 - -
Lal17g0009 997 SUPERFAMILY ThrRS/AlaRS common domain 674 822 IPR018163 GO:0000166
Lal17g0009 997 Gene3D - 735 788 - -
Lal17g0009 997 PANTHER ALANINE--TRNA LIGASE, MITOCHONDRIAL 81 988 - -
Lal17g0009 997 Hamap Probable alanine--tRNA ligase, chloroplastic. 70 994 IPR027522 GO:0009507
Lal17g0009 997 MobiDBLite consensus disorder prediction 62 82 - -
Lal17g0009 997 TIGRFAM alaS: alanine--tRNA ligase 85 971 IPR002318 GO:0000166|GO:0005737
Lal17g0009 997 SMART tRNA_SAD_4 764 807 IPR012947 GO:0004812|GO:0005524|GO:0043039
Lal17g0009 997 Gene3D - 811 872 - -
Lal17g0009 997 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 80 820 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Lal17g0009 997 PANTHER ALANYL-TRNA SYNTHETASE 81 988 - -
Lal17g0009 997 CDD AlaRS_core 85 312 - -
Lal17g0009 997 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 764 807 IPR012947 GO:0004812|GO:0005524|GO:0043039
Lal17g0009 997 SUPERFAMILY Class II aaRS and biotin synthetases 82 316 IPR045864 -
Lal17g0009 997 SUPERFAMILY Translation proteins 540 645 IPR009000 -
Lal17g0009 997 Pfam DHHA1 domain 844 986 IPR003156 GO:0003676
Lal17g0009 997 Gene3D Bira Bifunctional Protein; Domain 2 80 313 IPR045864 -
Lal17g0009 997 MobiDBLite consensus disorder prediction 67 82 - -
Lal17g0009 997 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 317 525 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0009 Lal-Chr17 41553 48654 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0009 K01872 - gmx:100817906 1481.85