Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1851 ATGTCTCTACCCAGATCTAATAATCCCCTGAAACCAATCTCATCTTTATTATCATACACCTTACCTCTCCACCGTTCAATCTCCACCAATGATTCACCTCTCACCATTGAAACCTCCCTCCCTTTCATCGCCCATAACTGCGACCCTCCCTCACGCGCCGTCACCACCACCTCCTCCGAGCTCATGTCCTTCTTCCACGACATGTCCCTCATGCGGCGGATGGAAATCACCGCCGACTTCCTCTATAAAGCTAGGCTAATTCGCGGCTTCTGTCACCTCTACGACGGCCAGGAGGCCGTAGCAGTAGGGATGGAAGCCGCGATCACAAGAAAAGATGCAATAATCACGTCATACCGTGATCATTGCACCTTTTTAAGTCGCGGCGGCACAATGCACGAGATTTACTCGGAGCTAATGGGCCGCCGCGACGGGTGCTCAAAAGGGAAGGGTGGGTCAATGCACTTATATAGGAAGGAGAGTGGGTTTTATGGTGGGCATGGGATTGTTGGGGCACAAATTCCCCTTGGTTGTGGAATTGCTTTGGCTCAAAAGTATTGTAAAGATGAGAATGTTACTTTTGCTTTATATGGTGATGGTGCTGCCAATCAGGGACAGTTGTTCGAGGCTCTTAATATCGCTGCGCTTTGGAATCTCCCCGCAATTTTGGTCTGCGAGAATAATCATTATGGAATGGGAACTGCTGCGTGGAGAGCTGCTAAGAGTCCTGCTTATTACAAGCGTGGTGATTATGTGCCTGGAGTGAAGCTAGATGGCATGGATGCTCTTGCTGTGAAACAAGTTTGCAAATTTGCAAAGGAACATGCTTTGAAGAATGGGCCCATTATTCTCGAAATGGACACGTACAGGTACCATGGCCACTCCATGTCTGATCCTGGCAGCACATACCGCACACGTGATGAAATTTCTGGTGTGAGACTGGAGCGTGATCCGATTGAAAGAATCAGGAAATTGTTAGTGTCTCATGACATTGCGACTGAAAAGGAGTTAAAGGACATGGAAAAGGAAATCAGGAAAGAAGTTGAGGAAGCCATTGGCAAAGCAAAGGATGGTCGAAGGCCGGATCCGTCTGAACTATTTACCAATGTATATGTTAAAGGTCTAGGGGTTGAGGCATATGGTACTGATAGGAAAGAAGTTAGAGTTACATTGCCATGA 1176 0.4753 MSLPRSNNPLKPISSLLSYTLPLHRSISTNDSPLTIETSLPFIAHNCDPPSRAVTTTSSELMSFFHDMSLMRRMEITADFLYKARLIRGFCHLYDGQEAVAVGMEAAITRKDAIITSYRDHCTFLSRGGTMHEIYSELMGRRDGCSKGKGGSMHLYRKESGFYGGHGIVGAQIPLGCGIALAQKYCKDENVTFALYGDGAANQGQLFEALNIAALWNLPAILVCENNHYGMGTAAWRAAKSPAYYKRGDYVPGVKLDGMDALAVKQVCKFAKEHALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRLERDPIERIRKLLVSHDIATEKELKDMEKEIRKEVEEAIGKAKDGRRPDPSELFTNVYVKGLGVEAYGTDRKEVRVTLP 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1851 391 CDD TPP_E1_PDC_ADC_BCADC 64 354 - -
Lal16g1851 391 Coils Coil 329 349 - -
Lal16g1851 391 Pfam Dehydrogenase E1 component 67 362 IPR001017 GO:0016624
Lal16g1851 391 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA-2, MITOCHONDRIAL 5 391 - -
Lal16g1851 391 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 54 372 IPR029061 -
Lal16g1851 391 Gene3D - 23 386 - -
Lal16g1851 391 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 5 391 - -
Lal16g1851 391 TIGRFAM PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 59 371 IPR017597 GO:0004739|GO:0006086|GO:0043231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1851 Lal-Chr16 17660570 17665332 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1851 5 391 Acyl Lipid Metabolism Gene Families AT1G24180 76.486 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1851 K00161 - gmx:100781250 661.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1851 16 17660570 17665332 Lal16g1851 16 17660570 17665332 ECH