Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1825 ATGGCAAGATACGATAGAGCAATCACTGTTTTCTCACCCGATGGTCATCTTTTCCAAGTCGAATACGCTCTCGAAGCTGTTCGTAAGGGAAACGCCGCTGTCGGCGTTCGCGGCACCGATAACGTTGTCCTCGGTGTTGAGAAGAAATCCACCGCCAAGCTTCAAGATTCTAGATCGGTGAGAAAGATTGTGAATCTAGACAATCACATTGCTCTTGCTTGTGCAGGACTAAAAGCTGATGCCCGTGTCCTTATAAACAAGGCACGAGTTGAATGTCAAAGCCACAGACTAACTGTTGAGGATCCGGTCACTGTTGAGTACATAACTCGTTATATTGCAGGTCTTCAGCAAAAGTATACACAAAGTGGTGGTGTGCGACCGTTTGGCCTTTCAACCTTGATTGTTGGCTTTGATCCATACTCTGGCACACCGTCCTTGTACCAAACAGATCCATCTGGTACGTTTTCAGCTTGGAAAGCTAATGCAACTGGGAGAAACTCAAATTCTATTAGGGAGTTCCTAGAGAAAAACTATAAAGAAGTTTCTGGGCAAGAAACTGTGAAATTGGCGATCCGGGCATTGCTTGAAGTTGTTGAGAGTGGAGGAAAGAACATAGAAGTTGCTGTGGTGACTAAGGAGCACGGGTTGCGTCAACTTGAGGAAGCCGAAATTGATGCCATTGTTGCTGAGATTGAAGCAGAGAAAGCAGCTGCTGAGGCTGCAAAGAAAGCCCCTTCAAAGGAAACATGA 750 0.4587 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDNVVLGVEKKSTAKLQDSRSVRKIVNLDNHIALACAGLKADARVLINKARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYSGTPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKEVSGQETVKLAIRALLEVVESGGKNIEVAVVTKEHGLRQLEEAEIDAIVAEIEAEKAAAEAAKKAPSKET 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1825 249 ProSitePatterns Proteasome alpha-type subunits signature. 4 26 IPR000426 GO:0006511|GO:0019773
Lal16g1825 249 PANTHER PROTEASOME SUBUNIT ALPHA TYPE 1 248 - -
Lal16g1825 249 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 1 248 - -
Lal16g1825 249 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 3 247 IPR029055 -
Lal16g1825 249 ProSiteProfiles Proteasome alpha-type subunit profile. 19 228 IPR023332 -
Lal16g1825 249 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 3 234 IPR029055 -
Lal16g1825 249 CDD proteasome_alpha_type_7 4 210 - -
Lal16g1825 249 Coils Coil 219 244 - -
Lal16g1825 249 Pfam Proteasome subunit 27 210 IPR001353 GO:0005839|GO:0051603
Lal16g1825 249 SMART Proteasome_A_N_2 4 26 IPR000426 GO:0006511|GO:0019773
Lal16g1825 249 Pfam Proteasome subunit A N-terminal signature 4 26 IPR000426 GO:0006511|GO:0019773
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1825 Lal-Chr16 17373047 17376315 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1825 K02731 - gmx:100808731 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1825 16 17373047 17376315 Lal15g1520 15 17335139 17339793 ECH
Lal16g1825 16 17373047 17376315 Lal16g1825 16 17373047 17376315 ECH
Lal15g1520 15 17335139 17339793 Lal16g1825 16 17373047 17376315 LSH