Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1781 ATGGATACAGTTTCTGAAAACCCTAATAAAACACCAAAAATAAACCCTATACCAAAATTAAAAGAAGCAATTCCCAAACCCAATGAATTCCCATCACACCTAACAACCCCTAATGTCTCCCCCACAGCAAGGATCCTCTGTGATCTCCTCACCCGAACATCGCCTCTCGAAATCGAAACCGCTTTAAACTCCTCCAACGTCTTCCCTTCTCCAGACTGTGTCATTGAGGTCATCAAACTCTCATACAATTATCCACACTCCGCCGTCAAGTTCTTTCGATGGGCCGGACGCCTTTCTCGGCATTCGGCTTATTCATGGAACTTAATGGTTGATTTGTTGGGTAAGAATCACTTATTTGAACCTATGTGGGACGTTATTCGTTCCATGAAACAAGAATGTGTATTGTCATTACCCACTTTTGTTTCCGTTTTCGAGAGTTATTGCACTGCTAGTAGGTTTAGTGAGGCTATTATGAGTTTCGATGTTATGGATAAGTATGGTATTAAGCAGGATGTAGTTGCTGTTAATTCATTGCTTAGCGCGATGTGTCGTCAGGAGAATCAAACTTGCGCTGCGTTCGATTTCTTTGATATGATTAAAGGGAAGATTGCGCCTGATGGTGATACTTTCGCGATTTTGCTTGAAGGTTGGGAGAAGGAAGGGAATGCTGCTAAGGCTAAGAGTACTTTCGGGGAGATGGTGGTTCGTGTTGGATGGAGTCAGATGAATAGGTCTGCTTATGATGCGTTTTTTATGACTTTGGTTCGGGCGTTGCAGATTGATGAGGCTGTGAAGTTTCTTAAAGTGATGAAGGATCATAACTGCTTTCCAGGTTTGAAATTCTTTACCAATGCTCTTGATATTCTTATCAAGCGAAATGACGTGGTTAATGCTATTACTATGTGGGATGTAATGGCCGGTAGTGGGTTAGTGCCGAATTTGATAATGTACAATGCTATGATTGGACTGCTCTGCAACAACGCTGAGATTGACTATGCGTTTCGGCTGCTCGATGAAATGGTCTTACAGGGTACTTTTCCTGATTCTTTAACTTATAACATGATTTTTGAATGTTTGGTGAGGAACAAAAAGGTTCGCGAAACTGAAAGGTTCTTCATTGAGATGATCAAGAATGAGCTTCCTCCAACTCTCGCTAATTGTACTGCAGCCATCAAGATGTTGTTTGATTGTGATGACCCGGAAACAGCACACGAGGTTTGGACTTACTTGGTTGAAAATCATGTCAAGCCACTCGACGAAAGTGCGAATGCGTTGCTCCGTGGCCTTTGTAAGTTAGGTAGACTTTCAGAGACGAGAAGGACTGCTGAACACATGATGGATAGAAGGATCAATATATATGAATCTACAATGGCGAAGCTGAAGGATGCATTCTATAAGAATAGAAGTGGAAGAGACAAATATGATAGCCTTTCCAAGAGGTGGAAAGCTCAATTCAAGTCGTAA 1464 0.4187 MDTVSENPNKTPKINPIPKLKEAIPKPNEFPSHLTTPNVSPTARILCDLLTRTSPLEIETALNSSNVFPSPDCVIEVIKLSYNYPHSAVKFFRWAGRLSRHSAYSWNLMVDLLGKNHLFEPMWDVIRSMKQECVLSLPTFVSVFESYCTASRFSEAIMSFDVMDKYGIKQDVVAVNSLLSAMCRQENQTCAAFDFFDMIKGKIAPDGDTFAILLEGWEKEGNAAKAKSTFGEMVVRVGWSQMNRSAYDAFFMTLVRALQIDEAVKFLKVMKDHNCFPGLKFFTNALDILIKRNDVVNAITMWDVMAGSGLVPNLIMYNAMIGLLCNNAEIDYAFRLLDEMVLQGTFPDSLTYNMIFECLVRNKKVRETERFFIEMIKNELPPTLANCTAAIKMLFDCDDPETAHEVWTYLVENHVKPLDESANALLRGLCKLGRLSETRRTAEHMMDRRINIYESTMAKLKDAFYKNRSGRDKYDSLSKRWKAQFKS 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1781 487 Pfam PPR repeat family 312 360 IPR002885 -
Lal16g1781 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
Lal16g1781 487 MobiDBLite consensus disorder prediction 1 21 - -
Lal16g1781 487 Pfam Pentatricopeptide repeat domain 161 215 IPR002885 -
Lal16g1781 487 Gene3D Tetratricopeptide repeat domain 243 363 IPR011990 GO:0005515
Lal16g1781 487 Gene3D Tetratricopeptide repeat domain 364 480 IPR011990 GO:0005515
Lal16g1781 487 PANTHER OSJNBA0019D11.15 PROTEIN 19 484 - -
Lal16g1781 487 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 19 484 - -
Lal16g1781 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 347 IPR002885 -
Lal16g1781 487 Pfam PPR repeat 104 132 IPR002885 -
Lal16g1781 487 Pfam PPR repeat 422 440 IPR002885 -
Lal16g1781 487 TIGRFAM PPR: pentatricopeptide repeat domain 351 383 IPR002885 -
Lal16g1781 487 TIGRFAM PPR: pentatricopeptide repeat domain 315 348 IPR002885 -
Lal16g1781 487 Gene3D Tetratricopeptide repeat domain 81 242 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1781 Lal-Chr16 16897407 16898870 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1781 235 482 Glycosyltransferase AT1G05670 23.387 9.64e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1781 - - gmx:100796114 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1781 16 16897407 16898870 Lal16g1781 16 16897407 16898870 ECH