Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1553 ATGAGTTCACTGAACCTGAACACATGGGCACGCCCCAGATTCATGTTGAAACAAGCCACCAGATCTAGATCTACGAATTTTCATCTTTTCCATAGTCTCAGAAAGTTACCCATTTCTTCTATCAGCACCACAAAACCAAAAAGGCCACAACTTTCTTCTTTTTCTTCTTTCTCCGTTTCCGCGGTGTTAACTAAAGACGACACACTCAAAAGCGAAGAAGAAAAAGAAAAATCCGCATTCAATTTCCAATCCTACATGGTTGAGAAAGCGCGCTCCGTGAACAAAGCCTTAGACGACGCCGTTTTATTAAAAGAGCCGCAGAAGATCCACGAAGCGATGCGGTACTCGCTGCTCGCCGGCGGGAAGCGCGTGAGGCCGGTGCTCTGCGTGGCTGCCTGCGAGCTTGTCGGCGGCAAGGAATCTATGGCTATGCCAGCGGCGTGTTCAATTGAGATGATCCACACCATGTCACTCATTCACGATGACCTCCCCTGCATGGACAACGACGACCTCCGCCGTGGGAAGCCTACAAACCACAAGGTTTTCGGCGAGGATGTCGCGGTCCTCGCAGGGGACGCTCTCTTGGCATTTGCCTTCGAACACATCGCCGTTTCCACGGCTGATGTGTCGCCAGCGAGAATCGTCCGCGCAATCGGGGAGCTTGCGAAATCGATCGGCACCGAAGGCCTAGTTGCCGGGCAAGTGGTGGACATTAATTCAGAAGGGTTGTCTGATGTTGGGCTAGAGAGATTGGAATTTATTCATCTTCATAAAACCGCAGCTCTTCTCGAAGGCGCGGTTGTTCTGGGAGCGATACTTGGTGGGGGAAACGATGAAGAGGTAGAGAAATTGAGAATGTTTGCAAGGTACATAGGATTGATGTTTCAAGTTGTTGATGATATTCTTGATGTTACTAAGTCATCAGAGGAATTGGGTAAAACTGCTGGTAAGGACTTAGTGGCTGATAAGGTTACATACCCTAAGCTTTTAGGGATTGAGAAATCAAAGGAGTTTGCTCAAAAATTGAATAGGGATGCACAAGAACAGCTTTCTGGGTTCGATCTAGATAAGGCTGCTCCTTTGGTTGCTTTAGCTAATTACATTGCTTTTAGGCAAAACTAG 1122 0.4795 MSSLNLNTWARPRFMLKQATRSRSTNFHLFHSLRKLPISSISTTKPKRPQLSSFSSFSVSAVLTKDDTLKSEEEKEKSAFNFQSYMVEKARSVNKALDDAVLLKEPQKIHEAMRYSLLAGGKRVRPVLCVAACELVGGKESMAMPAACSIEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIAVSTADVSPARIVRAIGELAKSIGTEGLVAGQVVDINSEGLSDVGLERLEFIHLHKTAALLEGAVVLGAILGGGNDEEVEKLRMFARYIGLMFQVVDDILDVTKSSEELGKTAGKDLVADKVTYPKLLGIEKSKEFAQKLNRDAQEQLSGFDLDKAAPLVALANYIAFRQN 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1553 373 SUPERFAMILY Terpenoid synthases 83 353 IPR008949 -
Lal16g1553 373 Pfam Polyprenyl synthetase 107 343 IPR000092 GO:0008299
Lal16g1553 373 Gene3D Farnesyl Diphosphate Synthase 74 373 IPR008949 -
Lal16g1553 373 ProSitePatterns Polyprenyl synthases signature 2. 291 303 IPR033749 -
Lal16g1553 373 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 1 373 - -
Lal16g1553 373 SFLD Isoprenoid Synthase Type I 85 370 - -
Lal16g1553 373 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE, CHLOROPLASTIC-LIKE 1 373 - -
Lal16g1553 373 CDD Trans_IPPS_HT 105 371 IPR000092 GO:0008299
Lal16g1553 373 ProSitePatterns Polyprenyl synthases signature 1. 158 174 IPR033749 -
Lal16g1553 373 SFLD Polyprenyl Transferase Like 85 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1553 Lal-Chr16 12890704 12891825 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1553 K13789 - zju:107424859 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1553 16 12890704 12891825 Lal16g1553 16 12890704 12891825 ECH