Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1551 ATGATTAAACTGTTCAAAGTAAAGGAAAAGCAGAGAGAGCTTGCAGAGAATGCCGGTGGAGGACCACCTATTAAGAAGCAATCTGCTGGGGAGTTGCGTGTTCACAAAGATATAAGTGAGCTGAATTTACCAAAATCTTGTTCCATACAATTTCCTAATGGCAAAGATGACTTGATGAACTTCGAAGTCACAATTCGACCTGATGATGGATACTATTTAGGTGGCACGTTTTCATTTTCCTTCCAAGTGTCTCCGATTTATCCACATGAGGCACCAAAGGTTAAGTGCAAGACAAAGGTCTACCATCCAAATATTGACTTGGAAGGAAATGTTTGCCTCAATATCTTACGAGAAGATTGGAAACCTGTTCTTAGTATAAACACTGTCATCTATGGATTGTTTCATCTCTTCACGGAACCAAATTATGAGGATCCATTGAATCATGATGCTGCTGCTGTCTTGAGAGATAACCCAAAGTTGTTCGAGTCTAATGTGAGGAGAGCTATGGCTGGTGGGTATGTCGGACAAACCTTTTTCGCTCGCTGTATGTAA 552 0.4076 MIKLFKVKEKQRELAENAGGGPPIKKQSAGELRVHKDISELNLPKSCSIQFPNGKDDLMNFEVTIRPDDGYYLGGTFSFSFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLSINTVIYGLFHLFTEPNYEDPLNHDAAAVLRDNPKLFESNVRRAMAGGYVGQTFFARCM 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1551 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 10 173 - -
Lal16g1551 183 CDD UBCc 33 167 IPR000608 -
Lal16g1551 183 Gene3D Ubiquitin Conjugating Enzyme 25 183 IPR016135 -
Lal16g1551 183 PANTHER - 10 173 - -
Lal16g1551 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 29 174 IPR000608 -
Lal16g1551 183 SUPERFAMILY UBC-like 24 178 IPR016135 -
Lal16g1551 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 101 116 IPR023313 -
Lal16g1551 183 Pfam Ubiquitin-conjugating enzyme 33 168 IPR000608 -
Lal16g1551 183 SMART ubc_7 32 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1551 Lal-Chr16 12854216 12859545 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1551 K10579 - gmx:100783122 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1551 16 12854216 12859545 Lal16g1551 16 12854216 12859545 ECH