Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1544 ATGGGAGACTTTAACAATGATCCTCTCATGCGCAATCAAAACGCCGCCGTTCAGGCCCGTGCTAAAGCCCAGAATCGTGCTAACGTCCTTCAGCTTAAGCTGATTGGACAGAATCACCCAACTGGTCTCACATCGAATCTGTTGAGGCTTTTTGAGCCTAGGCCTCCCTTGGAGTATAAACCTCCTTTGGAGAAAAGAAAATGTCCACCATTAACAGGGATGGCGCAATTTGTCAGCAAGTTCGCCGAGCCCGGTGATGCTGAATATTCTCCACCTGTACCAGTAGCTGAAACTCCTGCAGAAAAAAAAGCAAGAATACACAAGCTTCTTGTCGAGAAGGGAGCTGCAAAGGCTGTAGAGGAGCTTGAAAAATATGATCCACACAAGGACCCAAATATATCAGGAGATCCGTACAAGACACTGTTTGTAGCTAAACTGAGTTATGAGTCCACTGAGAGCAGAATCAAGAGGGAGTTTGAGTCATATGGTGCAATCAAACGGGTACGGTTGGTTACTGATAGTGTGACGAATAAGCCCAGGGGTTATGCATTCATTGAATACCTGCACACAAGAGACATGAAAGCTGCTTATAAGCAAGCTGATGGTAGGAAAATTGAGGGCAGAAGAGTGCTTGTTGATGTTGAACGTGGGAGGACTGTTCCAAATTGGCGACCTCGCCGTCTAGGTGGTGGCCTTGGCACCACTAGAGTGGGAGGTGAAGAAGTTAATCAGCGGCATTCTGGGAGGGAGCAACAGCAATCAGGACCTTCTCGATCTGAAGAACCTAGAGTGCGGGAGGACCGACATGGTGATCGGGACAGAGAAAAATCGCGTGAAAGAGGTAAAGATAGAGATCAAGAACAGGAGCGGTCACTTGAACGCTCTAGTGACAGAGCCAAGGATCGTGATTATAGAGAGGATAAGCACCACAGAGACCGGGATAGGAACAGGGACAGAGATAGGGAAAGAGAGCGAGATCATGGTCGTGATCGAGATAGAGAACGTGATCGGGATCGTGGTCGAGATCGCAATCATGATCGGGATCGAGTGAGAGACCGGGATCGAGAACATGATCGTCATCGTGAAAGGGATAGAGATTATGAAGTTGAAGAAAATGACAGGGGACGCTCTGATAGGAAGACTGATTATGATCATGTTGAATCTAATCATGAGAAAGACCGTCATGCTGATAGAGATAATGACTATGAACCTGAGGATGATCTTGGGTACCAACCTGTGCATCGACATAGACATGCAGATCCTGACCATGATGATCAGTATGACCAGTATGAGCATCATGTGGGACAGGGTAAACATGGTGATGGAGATGACCACGGTGACCATTACAATCAATATTCTGATCATGATGGGATGGAAAACGACTACCACACTAAACGAGCAACTTCTGAATCACGTGAAAGGGAGAAAAGTCGTGATGTGGACCATGGATATCGTCACTCAGAGAGGTCCCGTTCCCGTGAGCGTAGCGATCGATTCAAGCATGGAGTGATCAAAGCGCTTCGAAAGTACTCAGTTTCTGCTGCTATCATAAGCACAACAAAACCACCTGATTTTAAAGCTTTACTGCCGCCCGCATCTTTGGGGTTCTCAGAGAATTGGACTTTGATTGGTAAGCTTTATGGGCTTGTTGGTCTTCTTAGACTTGGACCCATTCAGGTTGCTATCAGAACCCAGGAAGTGGCTCAACTGATTTCAGTAGTGATGTTGAGTCAAGAATTGGCAAGAAATGAAATTTCAAGTTTGATGCAAAGAAGAAAAGAGATAAGAGCAAGATCCAGTGTTACAATTGCAGAAAATTTGGCCACTTTGCATTAG 1836 0.4608 MGDFNNDPLMRNQNAAVQARAKAQNRANVLQLKLIGQNHPTGLTSNLLRLFEPRPPLEYKPPLEKRKCPPLTGMAQFVSKFAEPGDAEYSPPVPVAETPAEKKARIHKLLVEKGAAKAVEELEKYDPHKDPNISGDPYKTLFVAKLSYESTESRIKREFESYGAIKRVRLVTDSVTNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGREQQQSGPSRSEEPRVREDRHGDRDREKSRERGKDRDQEQERSLERSSDRAKDRDYREDKHHRDRDRNRDRDRERERDHGRDRDRERDRDRGRDRNHDRDRVRDRDREHDRHRERDRDYEVEENDRGRSDRKTDYDHVESNHEKDRHADRDNDYEPEDDLGYQPVHRHRHADPDHDDQYDQYEHHVGQGKHGDGDDHGDHYNQYSDHDGMENDYHTKRATSESREREKSRDVDHGYRHSERSRSRERSDRFKHGVIKALRKYSVSAAIISTTKPPDFKALLPPASLGFSENWTLIGKLYGLVGLLRLGPIQVAIRTQEVAQLISVVMLSQELARNEISSLMQRRKEIRARSSVTIAENLATLH 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1544 611 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 210 IPR000504 GO:0003723
Lal16g1544 611 SMART rrm1_1 140 213 IPR000504 GO:0003723
Lal16g1544 611 Coils Coil 578 598 - -
Lal16g1544 611 SUPERFAMILY RNA-binding domain, RBD 128 239 IPR035979 GO:0003676
Lal16g1544 611 MobiDBLite consensus disorder prediction 259 498 - -
Lal16g1544 611 MobiDBLite consensus disorder prediction 221 498 - -
Lal16g1544 611 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 1 360 - -
Lal16g1544 611 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 42 130 IPR022023 -
Lal16g1544 611 CDD RRM_snRNP70 138 228 IPR034143 GO:0030619
Lal16g1544 611 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Lal16g1544 611 PANTHER - 1 360 - -
Lal16g1544 611 Gene3D - 126 251 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1544 Lal-Chr16 12723121 12736485 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1544 K11093 - rcu:8273430 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1544 16 12723121 12736485 Lal16g1544 16 12723121 12736485 ECH