Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1538 ATGAGTTTCAGGGAAGAAAACGCTGAAAACAGAGACCTTCAGAAACCGTTCCTCCACACTGGGAGCTGGTACAAATTGGGTACGAGGCAATCCAGCTTGATGAGTTCAACTCAGGCTTTACGCGACGGCTCTATCTCCATTCTCTTTTGCGTCCTCATAGCTGCCTTGGGTCCCATCCAATTCGGTTTTACAGGTGGGTATTCTTCTCCGACGCAACAGGCTATAATAAGCGATCTAAATCTCTCAATTTCGGAGTTCTCTCTGTTTGGGTCTTTATCGAATGTCGGTGCAATGGTGGGAGCTATAGCCAGTGGTCAGATAGCTGAGTACATCGGTCGCAAAGGGTCGTTGATGATTGCTTCCATCCCCAACATAATAGGGTGGCTTGCCATTTCTTTTGCCAAAGACTCCTCATTTTTATTTATGGGAAGAGTGTTAGAAGGTTTTGGCGTTGGGATCATCTCTTATGTGGTGCCTGTTTATATAGCTGAGATAGCACCTCAAAACATGAGAGGTACCCTTGGATCAGTGAACCAGCTCTCTGTCACAATTGGAATATTGATATCATATGTATTGGGCCTTTTTGTGAACTGGAGAGTGCTTGCAATTCTAGGAATTTTGCCTTGTACAATATTAATACCTGGATTATTTTTCATACCTGAATCTCCCAGATGGTTGGCCAAGATGGGGATGACAGAGGAATTTGAGTCTTCGTTGCAAGTGTTGCGAGGAATTGACACAGATATATCTGTTGAAGTACATGAAATTAAGAGATCTGTGGCATCAGCGGGAAAAAGGGCTACAATACGGTTTGCTGATCTGAAGAAGAAAAGATATTGGTTTCCTTTAATGGTAGGAATTGGATTACTTATGCTTCAACAATTGAGTGGTGCCAATGGAGTTTTGTTCTATTCAAGTACCATCTTCGCAAATGCAGGAATCTCATCCAGCAATATTGCTACATGTGGACTTGGAGCTATTCAGGTCGCAGCGACTGGAATCTCTACTTGGTTGGTGGACAAAAGTGGCAGGAGGGTGCTTTTAATAATATCCTCATCTATAATGACAGTTAGCCTTCTCCTTACTTCTATAGCATTCTATCTGGAGGAAATCATACCTAAGGATTCTGCTCTATCGAACATTTTGGCATTGGTCTCTGTAGCTGGGGTTGTGCTCATGGTAGTTGGGTTCTCTCTAGGCCTTGGACCAATCCCCTGGATTATAATGTCTGAGATACTTCCTGTGAATATAAAGAGTCTTGCTGGAAGTATAGCCACCATGGGAAATTGGCTAGTTTCATGGGTCATTACTATGACTGCAAACTTGCTTTTGACTTGGAGCAGTGGAGGGACATTCTTAATCTACACAATTGTTGCTGCCTTTACTGTTGCTTTTGTGGCACTATGGGTCCCTGAGACAAAGGGAAGAACATTGGAAGAAATTCAGTTTTCCTTTAGATAG 1461 0.4292 MSFREENAENRDLQKPFLHTGSWYKLGTRQSSLMSSTQALRDGSISILFCVLIAALGPIQFGFTGGYSSPTQQAIISDLNLSISEFSLFGSLSNVGAMVGAIASGQIAEYIGRKGSLMIASIPNIIGWLAISFAKDSSFLFMGRVLEGFGVGIISYVVPVYIAEIAPQNMRGTLGSVNQLSVTIGILISYVLGLFVNWRVLAILGILPCTILIPGLFFIPESPRWLAKMGMTEEFESSLQVLRGIDTDISVEVHEIKRSVASAGKRATIRFADLKKKRYWFPLMVGIGLLMLQQLSGANGVLFYSSTIFANAGISSSNIATCGLGAIQVAATGISTWLVDKSGRRVLLIISSSIMTVSLLLTSIAFYLEEIIPKDSALSNILALVSVAGVVLMVVGFSLGLGPIPWIIMSEILPVNIKSLAGSIATMGNWLVSWVITMTANLLLTWSSGGTFLIYTIVAAFTVAFVALWVPETKGRTLEEIQFSFR 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1538 486 Gene3D MFS general substrate transporter like domains 41 486 IPR036259 -
Lal16g1538 486 CDD MFS_GLUT6_8_Class3_like 48 480 IPR044775 GO:0008643|GO:0051119
Lal16g1538 486 Pfam Sugar (and other) transporter 51 482 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lal16g1538 486 PANTHER MAJOR FACILITATOR, SUGAR TRANSPORTER, MAJOR FACILITATOR SUPERFAMILY-RELATED 14 484 - -
Lal16g1538 486 PANTHER - 14 484 - -
Lal16g1538 486 ProSitePatterns Sugar transport proteins signature 2. 146 171 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lal16g1538 486 SUPERFAMILY MFS general substrate transporter 51 482 IPR036259 -
Lal16g1538 486 ProSitePatterns Sugar transport proteins signature 1. 104 121 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lal16g1538 486 TIGRFAM SP: MFS transporter, sugar porter (SP) family 38 481 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lal16g1538 486 PRINTS Sugar transporter signature 141 160 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lal16g1538 486 PRINTS Sugar transporter signature 293 303 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lal16g1538 486 PRINTS Sugar transporter signature 387 408 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lal16g1538 486 PRINTS Sugar transporter signature 410 422 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lal16g1538 486 ProSiteProfiles Major facilitator superfamily (MFS) profile. 50 474 IPR020846 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1538 Lal-Chr16 12642381 12648859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1538 1 486 Organic Solute Cotransporters AT1G75220 75.975 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1538 K03444 - gmx:100813399 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1538 16 12642381 12648859 Lal16g1538 16 12642381 12648859 ECH