Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1513 ATGCAACTCCCTATTGAGAAGTCGGTTTGGGCCAACCCAACATCACAAAATCCCATTGAGAAGTCGGTATGGGCTTTACCAACTTCCATTCAGAAGTCGGTTTGGGCCAAACCAACTTTTGAATGGAAGTTGGTAAAGCTCATTCCGACTTCTCAACTGAAGTTGGTAAAAACCCATGATAAAGCCCATACCAACTTCTCAATGGGAACGACGTCGTCTAAGCCCAAATCGACTTCTAAACGTGGTAGGTTCCCAATCATCAAATCAACGGTTGAGATTAAACGAATTATCATCCAACGGTCAAGGAAGCAGTTCGCATCCAAGGGAACTAACTTGTCGTTCGCAAGAATATGTGAGAAGTGTACCAATAAAAAAGAATTTGTTTATGTTGCTATGACCAAATTTAAGCTTGCTATGGCCATAGACAGAATTCTTAAACCATCCAAGTGGTTCTCTAACAAAAATCTTGGTCTTAATCTTCATCGTCAAAAATCAAGATCCTCCAACTCAACGTTAAACTGCCCTAGATCTTCTTCTCCTGTGTCATCACGTAACAGTTTAGAGAATGGCCTAACTGAGGCTTTTCGTCACTTCGACCGTGACGGAGATGGGAAAATCTCAGCCTTTGAGCTCCGATCCTATTTCGGGTCCATTGGAGAGTACGTGTCTCATGAAGAGGTTCAAGGGATAATTCATGATTTTGATTCTGATGGGGATAACATGTTGGACTTTAAGGACTTCATAAAATTGTTGAAGAAAGAAGGAAGAGATGGTGATAGTGATGAGGATGAGGGTGATCTCAGAAAGGCTTTTGAAATGTTTGTGTGGGAAAAAGAAGGGTTTGGTGGTTGTATCACTCCAAAAGGATTGCAGAGAATGTTGCACCGCTTAGGATATGAGAATTATTCCTATGATGAGTGTGTAGCCATGATTAATGCCTTCGACATAGATCACAATGGAGTCCTTGACTTCAATGAGTTTCATCAAATGATGGCCTAA 999 0.4124 MQLPIEKSVWANPTSQNPIEKSVWALPTSIQKSVWAKPTFEWKLVKLIPTSQLKLVKTHDKAHTNFSMGTTSSKPKSTSKRGRFPIIKSTVEIKRIIIQRSRKQFASKGTNLSFARICEKCTNKKEFVYVAMTKFKLAMAIDRILKPSKWFSNKNLGLNLHRQKSRSSNSTLNCPRSSSPVSSRNSLENGLTEAFRHFDRDGDGKISAFELRSYFGSIGEYVSHEEVQGIIHDFDSDGDNMLDFKDFIKLLKKEGRDGDSDEDEGDLRKAFEMFVWEKEGFGGCITPKGLQRMLHRLGYENYSYDECVAMINAFDIDHNGVLDFNEFHQMMA 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1513 332 Gene3D - 152 255 - -
Lal16g1513 332 CDD EFh 191 252 IPR002048 GO:0005509
Lal16g1513 332 ProSiteProfiles EF-hand calcium-binding domain profile. 186 221 IPR002048 GO:0005509
Lal16g1513 332 Pfam EF-hand domain pair 190 251 IPR002048 GO:0005509
Lal16g1513 332 ProSitePatterns EF-hand calcium-binding domain. 199 211 IPR018247 -
Lal16g1513 332 MobiDBLite consensus disorder prediction 162 187 - -
Lal16g1513 332 SUPERFAMILY EF-hand 190 331 IPR011992 -
Lal16g1513 332 ProSitePatterns EF-hand calcium-binding domain. 235 247 IPR018247 -
Lal16g1513 332 CDD EFh 267 332 IPR002048 GO:0005509
Lal16g1513 332 ProSiteProfiles EF-hand calcium-binding domain profile. 302 332 IPR002048 GO:0005509
Lal16g1513 332 ProSitePatterns EF-hand calcium-binding domain. 315 327 IPR018247 -
Lal16g1513 332 Pfam EF-hand domain pair 282 331 IPR002048 GO:0005509
Lal16g1513 332 SMART efh_1 306 332 IPR002048 GO:0005509
Lal16g1513 332 SMART efh_1 226 254 IPR002048 GO:0005509
Lal16g1513 332 SMART efh_1 190 218 IPR002048 GO:0005509
Lal16g1513 332 PANTHER CALCIUM-BINDING PROTEIN CML41-RELATED 155 332 - -
Lal16g1513 332 ProSiteProfiles EF-hand calcium-binding domain profile. 222 257 IPR002048 GO:0005509
Lal16g1513 332 PANTHER CALCIUM BINDING PROTEIN 155 332 - -
Lal16g1513 332 Gene3D - 256 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1513 Lal-Chr16 12151607 12152842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1513 146 332 EF-hand Containing Proteins AT3G50770 52.736 1.81e-59 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1513 K13448 - gmx:100306370 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1513 16 12151607 12152842 Lal16g1513 16 12151607 12152842 ECH