Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1274 ATGTCACACTTAATTGATAACACTCCTTCAACACCAGGGAAATTGAAACCAGATAAATCTTCTTATATTCATAACCGTTTCAGAATTCATTCTTCTTCTTTTTCTAAACTCACTCTTTGGTGTTTATTTTTCATCGCTTTCGTTATTTTCTTCTTCTTTCTCTCTCTTCTCTCCACCACCACTCCTTCCAATTCCGCCGCCGCCTCCAACCGCCGCTCCCTCGGCGCAACATGGGGCGGCTCTGCCTGGGAAAAGCGCGTCACTAAATCATCCCGCCGCGCCACCGCTTCTAACCGTGCCGTTCTTGTTACCGGCGCCGCCGGATTTGTCGGCATGCATGTCTCCCTCGCGTTGAAGCGCCGTGGCGACGGTGTTCTCGGCCTTGATAACTTTAACCGATACTACGATCTGAACCTCAAGCTCGCTCGCCAGAAGCTACTTGAACGCGCCGGCGTGTTCGTCGTTGACGGCGATATTAACGACGCCGCGCTGCTTCGGAAGCTCTTTGATGTTGTGCCGTTTACTCACGTGATGCACCTTGCGGCGCAGGCTGGGGTTCGGTACGCGATGCAGAACCCTGCGTCGTATGTGCACAGCAACATCGCTGGGTTTGTTAACCTTCTAGAAGCGTGCAGATCTGCGAACCCTCAACCGGCGATTGTTTGGGCTTCTTCCAGCTCCGTTTACGGGCTCAATTCGAAGGTGCCTTTCTCGGAGAAAGACCGTACAGACCAACCGGCAAGCCTCTATGCTGCGACGAAGAAGGCCGGGGAAGAAATTGCTCACACTTATAACCATATCCATGGCCTTTCCATCACTGGTTTGCGTTTCTTCACTGTTTATGGCCCTTGGGGACGACCTGATATGGCCTATTTCTTCTTTGCTAAGGATATTCTGAAGGGGAAGCAGATTTCGATCTTTCAAGATCCTGATCGTGGAACTGTGGCAAGGGATTTTACCTACATTGATGATATTGTGAAGGGTTGTTTGAGGGCTTTGGATACGGCCAAGAAGAGTACTGGCAGTGGTGGAAAGAAGAAGGGACCTGCACAGCTGAGAATTTTTAATTTGGGAAATACTTCACCAGTACCGGTGAGTGAGCTCGTGATGATTTTGGAGAAGCTGCTGAAGGTGAAGGCTAAGAGGAAGATGGTGCCCATGCCTAGGAATGGAGATGTTAGATTTACTCATGCCAACATTAGTTTGGCATACACGGAGCTTGGATACAGGCCTACAACTGATTTGGAGACTGGGCTCAAGAAGTTTGTGAGGTGGTACCTTGACTTTTATCCTGGGTCTAAGAAGAAAAGTGCTTGGTGA 1320 0.4962 MSHLIDNTPSTPGKLKPDKSSYIHNRFRIHSSSFSKLTLWCLFFIAFVIFFFFLSLLSTTTPSNSAAASNRRSLGATWGGSAWEKRVTKSSRRATASNRAVLVTGAAGFVGMHVSLALKRRGDGVLGLDNFNRYYDLNLKLARQKLLERAGVFVVDGDINDAALLRKLFDVVPFTHVMHLAAQAGVRYAMQNPASYVHSNIAGFVNLLEACRSANPQPAIVWASSSSVYGLNSKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIHGLSITGLRFFTVYGPWGRPDMAYFFFAKDILKGKQISIFQDPDRGTVARDFTYIDDIVKGCLRALDTAKKSTGSGGKKKGPAQLRIFNLGNTSPVPVSELVMILEKLLKVKAKRKMVPMPRNGDVRFTHANISLAYTELGYRPTTDLETGLKKFVRWYLDFYPGSKKKSAW 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1274 439 PRINTS Nucleotide sugar epimerase signature 127 143 - -
Lal16g1274 439 PRINTS Nucleotide sugar epimerase signature 317 332 - -
Lal16g1274 439 PRINTS Nucleotide sugar epimerase signature 352 367 - -
Lal16g1274 439 PRINTS Nucleotide sugar epimerase signature 392 409 - -
Lal16g1274 439 Gene3D - 98 431 - -
Lal16g1274 439 PANTHER UDP-GLUCURONATE 4-EPIMERASE 5 6 437 - -
Lal16g1274 439 PANTHER EPIMERASE-RELATED 6 437 - -
Lal16g1274 439 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 97 432 IPR036291 -
Lal16g1274 439 Pfam NAD dependent epimerase/dehydratase family 101 338 IPR001509 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1274 Lal-Chr16 8974765 8977253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1274 1 438 Miscellaneous Gene Families AT4G00110 75.114 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1274 K08679 - gmx:100788035 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1274 16 8974765 8977253 Lal16g1274 16 8974765 8977253 ECH