Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1262 ATGGCGGTCGCACCTTTTACGACCGTTTCCGCTTCTCGTTCTTGTCCTCCTTCTCCTAGTTGTGGCACGAAACTCTACTCAGGATTGAAGCTTCAATCTGCAAGTGTGCCTTCAAATTTCTTGCGTTATCATAATCTTGTTACGATTTGTTGGTTCCTCACCATTTTCACTTTCTCAATCGCAGGTCTTTTTAGTTCGTCTAAACCTAATGTCACCGCTGCGTTTTATGGAAAAGTTTACAAGAGTCTTCAGCTCCGGTATCCTAACCAGAAACCAGCAAGGGCACAAATTCATATGATGCCTATAGGGACCCCTAGAGTCCCCTATAGGACACCCGGTGAAGGAACTTGGCAATGGGTTGATTTATGGAATGCCCTTTATCGAGAGCGCGTTATCTTCATTGGGCAAAACATTGATGAAGAGTTTAGTAACCAAATATTGGCAACCATGCTGTATCTTGACAGCATAGATAATGCCAAGAAGCTCTACATGTACATCAATGGCCCTGGTGGGGATCTTACACCAAGCATGGCTATCTATGACACCATGCAGAGCTTGCAAAGTCCAGTAGCTACCCATTGTGTTGGCTATGCCTATAATCTTGCTGCATTTCTTCTTGCAGCTGGAGAAAAGGGAAATCGCTTTGCAATGCCTCTTTCAAGAATTGCTCTCCAATCTCCAGCAGGAGCTGCTCGTGGGCAGGCCGATGACATTCAAAATGAAGCAAATGAACTACTTAGAATCAGAGATTACCTCTTCAAGGAGTTGGCTAACAAGACAGGTCAGCCTGTTGAGAAGATTACCCAAGACCTGAGCAGGATGAAACGCTTCAACGCACAGGAGGCTCTCGAATATGGGCTAATCGATAGAATTGTCAGGCCTCCCCGGATTAAGGCTGATGCACCTCGCAAGGATGCAGGGACAGGTCTTGGTTAA 936 0.4573 MAVAPFTTVSASRSCPPSPSCGTKLYSGLKLQSASVPSNFLRYHNLVTICWFLTIFTFSIAGLFSSSKPNVTAAFYGKVYKSLQLRYPNQKPARAQIHMMPIGTPRVPYRTPGEGTWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSIDNAKKLYMYINGPGGDLTPSMAIYDTMQSLQSPVATHCVGYAYNLAAFLLAAGEKGNRFAMPLSRIALQSPAGAARGQADDIQNEANELLRIRDYLFKELANKTGQPVEKITQDLSRMKRFNAQEALEYGLIDRIVRPPRIKADAPRKDAGTGLG 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1262 311 PRINTS Clp protease catalytic subunit P signature 121 136 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lal16g1262 311 PRINTS Clp protease catalytic subunit P signature 161 181 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lal16g1262 311 PRINTS Clp protease catalytic subunit P signature 192 209 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lal16g1262 311 PRINTS Clp protease catalytic subunit P signature 213 232 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lal16g1262 311 PRINTS Clp protease catalytic subunit P signature 270 289 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lal16g1262 311 Pfam Clp protease 118 293 IPR023562 -
Lal16g1262 311 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 2, CHLOROPLASTIC 63 305 - -
Lal16g1262 311 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 63 305 IPR023562 -
Lal16g1262 311 Gene3D - 103 298 - -
Lal16g1262 311 CDD S14_ClpP_2 121 291 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lal16g1262 311 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 103 295 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lal16g1262 311 SUPERFAMILY ClpP/crotonase 114 295 IPR029045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1262 Lal-Chr16 8865840 8870846 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1262 K01358 - zju:107406406 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1262 16 8865840 8870846 Lal16g1262 16 8865840 8870846 ECH