Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1246 ATGGCAAACAACGTTGGAATTCTCGCTATTGACATCTACTTCCCTCCCACCTGCATTCAGCAGGAAGCACTGGAGGCTCATGATGGTGCTAGTAAAGGAAAATATACTATTGGACTTGGACAAGATTGCATGGCGTTTTGTTCGGAAGTTGAAGATGTCATCTCAATGAGTTTGACAGTGGTCACTTCCCTTCTTGAGAAGTATGAGATTGATCCAAAACAAATTGGTCGTTTGGAAGTAGGCAGTGAGACTGTGATAGACAAAAGCAAATCCATCAAGACATTTCTGATGCAGATCTTTGAGATGGCCAGATCACCAGATACTAGCCTTCTTCGTTGTAATAAATATGGAAATACTGATATTGAGGGTGTCGATTCATCCAATGCATGCTATGGAGGAACCGCTGCTTTGTTTAATTGTGTCAATTGGGTGGAGAGCAGTTCATGGGATGGACGCTATGGACTCGTTGTCTGCACTGACAGTGCTGTATATGCTGAAGGACCTGCTCGGCCTACTGGTGGAGCTGCTGCTATTGCCATGCTAATTGGTCCTGATGCTCCCATTGCTTTTGAAAGCAAACTGAGGGGAAGTCACATGGCTCATGCGTATGATTTTTACAAGCCTAATCTGGCCAGTGAATATCCAGTTGTTGATGGGAAGCTATCTCAAACTTGTTACCTTATGGCTGTTGATACTTGCTATAAACATTTAAGTCACAAATATGAGAAACTTGAGGGAAAGCCATTTACTCTCAATGATGCTGAGTACTTTGTATTTCACTCTCCTTATAACAAGCTTGTACAGAAAAGTTTTGCTCGTTTGGTGTTCAATGATTACTTGAAGGATCCCAGCTCCGTGGATGAGATTGCCAAAGAAAAGCTGGGACCTTTTGCAACTTTATCTGGTGATGAGAGCTACCAAAGCCGGGATCTAGAAAAGGCATCCCAGCAAGTAGCAAAACCTCTATTCGATGCAAAGGTGCAACCAACTACTTTGGTACCTAAACAAGTTGGCAACATGTACACTGCCTCTCTCTATGCAGCATTTATTTCACTTATTCACAACAAACATAGCGCATTGGCTGGCAAGAGGGTGATACTATTTTCATATGGTAGCGGATTAACCGCCACAATGTTTTCTTTGCAATTACATGATGGTCAAGGACCATTTAGCTTGTCAAACATTGCTAAAGTGATGGATATTGCTGGAAAATTGAAGTCAAGGCATGAGTTTCCTCCAGAGAAATTTGTCGAAATCATGAAGCTAATGGAGCATAGATATGGTGCCAAGGAGTTTGTAACAAGCAAGGATACTAGCCTTTTATCTCCAGGCACATACTATCTCACTGAAGTTGACTCCATGTATAGGAGATTCTATGAAAAGAAAGCCAGTGAAAGCAATTTGACTCCTACAGAAAATGGTGTGGTTGCCAATGGTCACTGA 1443 0.4207 MANNVGILAIDIYFPPTCIQQEALEAHDGASKGKYTIGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYEIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEMARSPDTSLLRCNKYGNTDIEGVDSSNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPIAFESKLRGSHMAHAYDFYKPNLASEYPVVDGKLSQTCYLMAVDTCYKHLSHKYEKLEGKPFTLNDAEYFVFHSPYNKLVQKSFARLVFNDYLKDPSSVDEIAKEKLGPFATLSGDESYQSRDLEKASQQVAKPLFDAKVQPTTLVPKQVGNMYTASLYAAFISLIHNKHSALAGKRVILFSYGSGLTATMFSLQLHDGQGPFSLSNIAKVMDIAGKLKSRHEFPPEKFVEIMKLMEHRYGAKEFVTSKDTSLLSPGTYYLTEVDSMYRRFYEKKASESNLTPTENGVVANGH 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1246 480 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 188 462 IPR013746 GO:0004421|GO:0006084|GO:0010142
Lal16g1246 480 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 118 133 IPR000590 GO:0004421|GO:0008299
Lal16g1246 480 Gene3D - 1 464 IPR016039 GO:0016746
Lal16g1246 480 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 462 - -
Lal16g1246 480 SUPERFAMILY Thiolase-like 4 185 IPR016039 GO:0016746
Lal16g1246 480 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 2 462 IPR010122 GO:0004421|GO:0008299
Lal16g1246 480 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 3 187 IPR013528 -
Lal16g1246 480 SUPERFAMILY Thiolase-like 188 460 IPR016039 GO:0016746
Lal16g1246 480 CDD init_cond_enzymes 4 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1246 Lal-Chr16 8696512 8701807 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1246 K01641 - gmx:100782595 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1246 16 8696512 8701807 Lal16g1246 16 8696512 8701807 ECH