Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1244 GTTTCCATGGATGACGATGGCGGTGTTGTAAAAGTGCCATCTAGTGTCATAACTGCGATAAACTTTGATGTTTTAACCGCAGAAGACAAAGAGAAAATAGCTGCTTTGGAGATCAATGCACCTGGGCAAGTCATTTCTTCTGATCTGGGACTACCGAATTTATCGTCCGAGTGCTCCACTTGTGGTTCCGTAGATTTATATTCTTGTGAAGGTCATTTTGGAGTAATCAAATTTCCTTTTGGCATCTTCCACCCATACTTTTTATCTGAGATTGCAGAAATATTGAACAGAATTTGCCCTGGATGTAAATCTATTCTACGAGAATTATGTACCAAGGTTAGGTACCTTCTGATACTACTAAATAGTAATACAGGTGAAAAATCAATGTCTAGAATTAATAAGACTAGCGGTTGCAAATATTGTGCTGTAAGTTGGTTTGGCTCCACTTTCATTTGTTCACCTCCTCCTGAATTTTTGTTTTCCTTTTTCATTCTGAGTCCTATGCTGTGCATGAAACAGGGGAGATCAATGGGTTGGTATCCAAGGATGAAGTTCAAAGTTTCCTCTTCCTCAAATGATCTCTCCAGAAGAAATGTGATTATTGTCGACGTAAATGACAAGGTTCCAAAGAAGAAGGGAGCTTCGGGGCGAGAGCTTCCAGCTGATTATTGGGATTTTGTTCCGGGAGATGCTCAACAGGACGAAAGCTGTATGAAATTAAATCGAAGGGTTTTATCACCTCTTCAGGTTTGTCATTTGTTGAGTGATGTTGATCCAAATTTCATTGAAAAATTTGTTAGGCGATTGGATTTGCTTGGATTCAATAGCTTACTGGTGACACCGAATTCTCAACGTGTGACAGAAGTCATGCAAACACTCTCTTATCGAAATAGGTTGAGTTATGATGAGAGGACTAGGGCATGTAAGAAGTTGGTTGATTTCAGGGGAACAGTTAATGAGTTAAGTTCCCAAGTTTTGGATTGCCTGAGGATCTCTAAGGCAAGCTGTTACATTATTTTTTTCCTTTATTGTGTTAGGCAATTTTTCCATAATGGTCCTCGTGCTAATGATTTTGCTACTAAAATGCAGCTAAATCCTGATAAAACCAAAAGTAATAGTTTTGCTGATATCCAGACAAGGATGAATGCAGATAATGCTTGTAACTCTTCTGGTTTGAAATGGATGAAGGACGTGGTTCTTGCAAAACGCAATGATCACTCATTTCGTTTGGTGGTTGTCGGTGATCCAGATCTTGAGCTTAGTGAAATTGGCATACCTTTTCAAATTGCAGAAAGTTTGCAGGTTCCTGAGCATGTGAACATGCAGAATAAGGAAAAGTTGTTTTATTATTTTGATCTGCTCTTATTAGTAAAGGGTCATATAATGGTCTGCAGAAAAGGTTCTCCAGTCCCACTTCATAAAAAGGAACATCTCAAGATAGGAGACATATTCTATAGGCCACTTGATGATGGCGATATAGTGTTGATAAATAGGCCTCCTTCCATACATCAACATTCTCTGATTGCCCTTTCCGTTAGGGTCCTTCCTATATCTTCCGTTGTATCTATTAACCCACTATGTTGTTCACCATTGTGCGGGGATTTTGACGGAGATTGCCTTCATGGATATATTCCACAATCAGTTGATGCAACAGTAGAGCTCAAAGAGCTGGTTGCTTTAGATAAGCAATTGATTAACGGGCAAAGTGGAAGAAATCTGCTCTCACTTTCTCAGGATAGTTTAACAGCTTCTTATTTGTTGATGGAAGATGGAGTTCTCTTGAGTACTTACCAGATTCAGCAGCTCCAAATGCTTTCCCCTCATAATTTGACACTGCCTGCAATTGAAAAATCTTCTTCGAGTGAAACCTCGTATTGGAGTGGCGAGCAATTATTCAGCATGCTATTGCCTTCAAACTCTGTGAATGATTGGTTATGTGATTTTAATTATAACATTGTCCAGAGAATTTTGCACCACTTTCTGGGGAAATCGCTACACTTCTTGTATGGTGTGCAGAAAGCTCTTTGTGAGTGGTTGTCTATGATAGGATTTAGCGTTTCACTGTCAGATATGTACCTATCTTCTAATTCTCATGGACGAAAAAATATGGTGGAAGAAATCTCCTGGGCCTTGAAAGAAGCAGAAGAAGCATGTAATTTCAAACAGTTACTAACGGATTATAATTGTGATTTTCTCTCAGGAGTTTGTGAAGATGGTGAAATTGATATGACCGTAGGAGCGGATCATCTTAATTATGAAAGGCAAGTATCCTCTGCTCTCAGTCAAGCTTCTGTTCATGCTTTTAGAAGAATTTTTCGGGATATTCAAAGTTTAGTCTACAACCATGCATGTAAGTCCAATACTTTGCTTTGTATGTTTAAGGCTGGAAGCAAGGGTAACTTACTAAAATTAGTACAACACGCCATGTGCCTTGGCCTGCAACACTCTCTAGTTCGCTTGTCATACAAAATTCCTTATCAACTCTCATGTGATGGTTGGAATAGTCAAACATGCGACTCAAATCAGATGTTACCTGTTTGTCCTGAATCTGTTCAGTCTTATGTTCCCTATGCTGTGATTGAAAGCTCTTTCTTGACTGGGTTGAATCCACTTGAATGCTTTGTTCATTCACTGACAAACCGTGACAGTTCTTTTAGTGGCAATGCATATCTTCCTGGAACTTTGACACGAAGACTTATGTTCTTCATGCGTGATTTGTACAATGCATATGATGGAACAGTGAGGAATTTATATGGCAATCAACTTATTCAGTTCTCTTATGATCCTGACGAGGACTCATCTTCCGATAGTTTTTACCAAGAGTGCACTATAGGTGGTGAACCAGTTGGAGCACTTTCAGCTTGTGCAATTTCTGAAGCTGCATACAGTGCTTTGGATCAACCTATTAGTCTACTTGAGACATCACCATTGTTGAGTTTAAAAAGTGTTCTTGAGTGCGGTACGAAGAAAAGTGGTAACCAGACTATGTCTTTATATTTGTCTGAGAAGCTTGGTAAATATATATATGGTTTTGAATATGCAACATTGGAAGTTAAGGATTACTTGGAGAGAATGTTGTTCTCAGATATTGTTTCAACTGTGATGATCACATTCACCCCAAGGTCTAATAGTCAGGCACAATATAGTCCTTGGATTTGCCATTTTCATTTACACAAGGAAATTGTAAAGAGAAGAAAATTAAAATTGCATTCAATTGTGAACACCCTCTACCGGCAATGTGACTCAGTGAGAAAAGAACGAAAAGTTAGTATGCCCAGTTTGAAAATATCATGCAAGAAGTGTTCTGCAGCTTACATGGCTATGGATGGTGAAGATTGTTGTATTGAAAAAGATAAGGAGAGTGAAGATTGTATCACGGTTGAAATCGTGGAAAACTCAAAGAATACTACACAACTGGATTCTGTTCGGGACTTGTTGATACCGTTCCTTCTAGGAGCAGCTATAAAAGGATTTATGGAGATCAAGAAGGTTGATATTCTGTGGAATAATCAGTCAAAGGTATCAAGATCTAATAATGGTTCCCCTGGTGAACTGTACTTGAAGGTTACTATATCCGGTGACTCTCGCAGTGGCAGATTGTGGGGCGTACTCATAAATCACTGTTTCCGGATAATGGATATTATTGACTGGACGCGCAGTCATCCTGATAGCATTCACCATACATGTTCAGCCTATGGAATAGATGCAGGGCGCGAATATTTTCTTTATAGTTTAGCATCTGCAATATCTGATACTGGCAAAGCAGTCCTTCCTAAGCATCTGCTTCTTGTTGCCAATAGTCTTTCGGCAAGTGGTGAGTTTGTCGGATTGAATGCTAAGGGAATGGCCCTGCAAAGACAACATGCTTGTGTTTCATCACCTTTCGTGGAATCTTGTTTTTCGAATCCTGGTCGTTGCTTTATAAAAGCTGCTAAGTCCGGAGTTGTGGATCATCTACAGGGGAGCCTAGATGCACTCGCTTGGGGAAAACGCCCTTCCATGGGCTCAACTGGACAGTTCGATATAATACTTTTGGAGGGACAAGAACTTGTTATGCCTATAGATGTGTATACCTTGCTAGAAGCCAGTTCTGACAAGCTGAATGAAAATATCAATGCCCATGTTGCTGCTCAAAACAATTTATCAGACAAATGTAGTTCTGAGTTTAAGCATAAAAATGGTGGTTATGCCTTGAAGTGGAGCAAGACTTTGGAAAGCCTGATACGGAATTCCGTCACTGTTAATGATATTTGGAAGCTGCTTTTTAGATCAAAGTGCATATTGAAAAAGTATTCTACTAATTCTACTGATCAGCAGCAACTTGGTAAGAGAGATAAATCAACCATGTTGATGGTTTTGTATTTTCATCCTAAAAGAAATGAGAAGATTGGCATTGGACCACAATGCATAAAGGTTGGATGGCACCCTAAGTATAAGGATACACGTTGCTTCTTTATAGTACGGAATGATGGCACTTCTGAAGATTTTTCATATCGTAAGTGCATCATTGGTGCTCTTGAAATTGTTCACCCACAAAAGGCAAAGATCAGGAAGAAAAAATGGTTACAAAATGCAGTTTTTTAA 4584 0.3911 VSMDDDGGVVKVPSSVITAINFDVLTAEDKEKIAALEINAPGQVISSDLGLPNLSSECSTCGSVDLYSCEGHFGVIKFPFGIFHPYFLSEIAEILNRICPGCKSILRELCTKVRYLLILLNSNTGEKSMSRINKTSGCKYCAVSWFGSTFICSPPPEFLFSFFILSPMLCMKQGRSMGWYPRMKFKVSSSSNDLSRRNVIIVDVNDKVPKKKGASGRELPADYWDFVPGDAQQDESCMKLNRRVLSPLQVCHLLSDVDPNFIEKFVRRLDLLGFNSLLVTPNSQRVTEVMQTLSYRNRLSYDERTRACKKLVDFRGTVNELSSQVLDCLRISKASCYIIFFLYCVRQFFHNGPRANDFATKMQLNPDKTKSNSFADIQTRMNADNACNSSGLKWMKDVVLAKRNDHSFRLVVVGDPDLELSEIGIPFQIAESLQVPEHVNMQNKEKLFYYFDLLLLVKGHIMVCRKGSPVPLHKKEHLKIGDIFYRPLDDGDIVLINRPPSIHQHSLIALSVRVLPISSVVSINPLCCSPLCGDFDGDCLHGYIPQSVDATVELKELVALDKQLINGQSGRNLLSLSQDSLTASYLLMEDGVLLSTYQIQQLQMLSPHNLTLPAIEKSSSSETSYWSGEQLFSMLLPSNSVNDWLCDFNYNIVQRILHHFLGKSLHFLYGVQKALCEWLSMIGFSVSLSDMYLSSNSHGRKNMVEEISWALKEAEEACNFKQLLTDYNCDFLSGVCEDGEIDMTVGADHLNYERQVSSALSQASVHAFRRIFRDIQSLVYNHACKSNTLLCMFKAGSKGNLLKLVQHAMCLGLQHSLVRLSYKIPYQLSCDGWNSQTCDSNQMLPVCPESVQSYVPYAVIESSFLTGLNPLECFVHSLTNRDSSFSGNAYLPGTLTRRLMFFMRDLYNAYDGTVRNLYGNQLIQFSYDPDEDSSSDSFYQECTIGGEPVGALSACAISEAAYSALDQPISLLETSPLLSLKSVLECGTKKSGNQTMSLYLSEKLGKYIYGFEYATLEVKDYLERMLFSDIVSTVMITFTPRSNSQAQYSPWICHFHLHKEIVKRRKLKLHSIVNTLYRQCDSVRKERKVSMPSLKISCKKCSAAYMAMDGEDCCIEKDKESEDCITVEIVENSKNTTQLDSVRDLLIPFLLGAAIKGFMEIKKVDILWNNQSKVSRSNNGSPGELYLKVTISGDSRSGRLWGVLINHCFRIMDIIDWTRSHPDSIHHTCSAYGIDAGREYFLYSLASAISDTGKAVLPKHLLLVANSLSASGEFVGLNAKGMALQRQHACVSSPFVESCFSNPGRCFIKAAKSGVVDHLQGSLDALAWGKRPSMGSTGQFDIILLEGQELVMPIDVYTLLEASSDKLNENINAHVAAQNNLSDKCSSEFKHKNGGYALKWSKTLESLIRNSVTVNDIWKLLFRSKCILKKYSTNSTDQQQLGKRDKSTMLMVLYFHPKRNEKIGIGPQCIKVGWHPKYKDTRCFFIVRNDGTSEDFSYRKCIIGALEIVHPQKAKIRKKKWLQNAVF 1527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1244 1527 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 11 1343 - -
Lal16g1244 1527 SMART rpolaneu7 270 588 IPR006592 GO:0003677|GO:0003899|GO:0006351
Lal16g1244 1527 Pfam RNA polymerase Rpb1, domain 3 564 691 IPR007066 GO:0003677|GO:0003899|GO:0006351
Lal16g1244 1527 Pfam Protein of unknown function (DUF3223) 1434 1502 - -
Lal16g1244 1527 Gene3D - 1415 1504 - -
Lal16g1244 1527 Pfam RNA polymerase Rpb1, domain 4 761 816 IPR007083 GO:0003677|GO:0003899|GO:0006351
Lal16g1244 1527 Gene3D - 398 567 - -
Lal16g1244 1527 Gene3D - 684 869 IPR038120 -
Lal16g1244 1527 Gene3D RNA polymerase Rpb1, domain 3 568 651 IPR042102 -
Lal16g1244 1527 Gene3D RNA polymerase II, clamp domain 8 118 IPR044893 -
Lal16g1244 1527 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 10 1414 - -
Lal16g1244 1527 CDD RNAP_IV_RPD1_N 25 915 IPR040403 -
Lal16g1244 1527 Pfam RNA polymerase Rpb1, domain 2 402 558 IPR000722 GO:0003677|GO:0003899|GO:0006351
Lal16g1244 1527 PANTHER DNA-DIRECTED RNA POLYMERASE 10 1414 IPR045867 GO:0003899|GO:0006351
Lal16g1244 1527 Gene3D RNA polymerase ii 434 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1244 Lal-Chr16 8669783 8679867 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1244 K16250 - gmx:100796185 1838.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1244 16 8669783 8679867 Lal16g1244 16 8669783 8679867 ECH