Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1208 ATGGCTCTATCATTTCTCTCTCTCCCACACTTTCTCTCTCCTTCAACCACATCAACCATAACTAAATTCCCTCCTTCTTCTACTCCCTTCCTTCTTCGTTCATTCCCTATTCCTCTTCGTGCCATTGGTCCCCACTCCAAGTTCCACAACCCTACCCCCTCCGACAACGACCCTCCCGAAGCCCCCGAAGACACCGCCCACGGCGTCTCCAGGTTCCAACAAATCCACCGTCAAGCTGACCGTGCCCGCCTCCGCGAGGAGCAGGACTTCAAAGATAATCAGTCTACTTACCTTGCTGCTATTGCTGACGTCGAAGATGCTCCTGATGATGACGATCCTTCCTCAATTGATTCTCAATACTCCGGCGACGATCTTTTCGGAGAAATTGATAAGGCTATTGCTCTTAAACGCAAAGAGTTCGTTAAACAAGGTCTTCTACAACCGAATCCGAAGAAACAACCGGTTTCTGTTGAGGATGTGGATGAGCTTCAACCTGAGGAGGTTGTTGATTTGGAAGAAATTGAGCAACTCCAAGGGTTACGTGTCGTTTCTGAGGATTCTGATGAAGCAACGGATTCGAGTGAATTGGATGCGAAAAACGGAGGTTCTGATTTGAATTCTGATTCTTCGTTTGATTTAGATTTTGACAGTTATGGAAAAAGTAAGGCTAGGATTGTGGAGCCGAAGTTTAGGATGAGTTTAGCTGAGCTTTTAGATGAGAGCAAGGTTGTGCCTGTGTCTGTGTATGGTGATTTAGAGATAGAGATCACTGGGATTCAGCATGATTCTAGGATTGTAACTTCTGGTGATTTGTTTGTGTGCTGTGTCGGCCAAAAAACCGATGGACACTTGTTTTTGACTGAGGCTGATAAGAGAGGAGCGGTTGCTGTTGTCGCCAGTAAAGAGATTGATATTGAGGAAACCTTGGGTTGTAAGGCATTGGTGATTGTGGAAGATACTAATGCTGTGCTTCCTGTGTTGGCCGCGTCTTTTTATAAGTATCCTTCCAAGAATATGGCGGTTATTGGGATAACTGGGAGTTATGGGAAAACAAGTACTACTTATTTGATTAAAAGCATGTATGAAGCAATGGGGCTAAGGACGGGAATGTTGAACTCAGTTGCTTATTATGTGCACGGGGATAATAAATTGGAGTCGTCAAACATGACTCCGGATGCTGTTTTAGTTCAGAATTTGATGGCAACGATGCTTCATAATGGAACTGAAGCAGTTGTCATGGAGACTTCTTCTGATGCATTGGCTAAAGGGAAGTGTGACGAGGTTGATATTGATATTGCGGTTTTTACTAATTTGAATCAGGAGGAAGATAGAGATGCACAGGCTAAACTGTTCTCAAGAATGGTGGATCCTGAACGGCACAGGAAAGTTGTTAACATTGATGATCAGAATGCGTCTTTCTTCGTTTCACAGGGGAACCCTGAAGTTCCTGTTGTGACATTCGCAATGGAGAATAAGAGTGCAGACGTTCATCCCTTGAAGTTTGAACTCTCGCTGTTTGAGACACAGGTGTTGGTTAATACACCCAGTGGAATACTTGAAATTTCGTCAGGTTTACTTGGAAGACATAATATTTACAACATTCTTGCTGCCGTGGCAGTTGGCATTGCTGTCGGGGCACCATTAGAGGACATTGTTAGAGGGATTGAAGAGGTTGATGCAGTTCCTGGTAAGTGTGAATTAATTGATGAGGAGCAAGCGTTTGGGGTGATAGTGGACTATGCTCGAACTCCGGATGCCTTGTCCAGATTGCTTGATTTTGTAAGAGAGCTTGGACCTCGCAGGATCATAACTGTTATTGGTTGCTGTGGTGAGAAAGAGAGGGGGAAGAGACCTCTGATGACTAAGATAGCAACAGATAAAAGTGAAGTGACTATGCTGACATCTGACAACCCCATGAATGAAGACCCATTGGATATTTTGGATGATATGTTGGCTGGGGTAGGATGGACAATGCAGGACTACCTGAAACATGGGGAGAATGACTACTACCCACCTCTTCCAAATGGTCATAGGCTTTTTCTCCATGACATTAGGAGGGTAGCTGTTCGAGCTGCAGTTGCAATGGGAGAGGAGGGTGATGTGGTTGTGGTTGCTGGCAAAGGCCATGAAACGAATGAAATAGAAGGCGATAAGAAGGATTTCTTTGATGACCGAGAAGAGTGCCGAGAAGCATTGCAGTATGTTGATGAGCTTCACCAGGCTGGAATAGATACAAGTGAATTTCCCTGGCGAGAGCCACTAATAATCAATGCTGCTGTGATGAATAGCGAGTACCACATTACTTGTTTCCCGGAGCACAAATTGTGCAAGATGAAAGAAGACGACCTTTCCGCGATTAGAGGGCTCTTTGTTGGAGATTCGGAATCAACCAGGTAA 2397 0.4476 MALSFLSLPHFLSPSTTSTITKFPPSSTPFLLRSFPIPLRAIGPHSKFHNPTPSDNDPPEAPEDTAHGVSRFQQIHRQADRARLREEQDFKDNQSTYLAAIADVEDAPDDDDPSSIDSQYSGDDLFGEIDKAIALKRKEFVKQGLLQPNPKKQPVSVEDVDELQPEEVVDLEEIEQLQGLRVVSEDSDEATDSSELDAKNGGSDLNSDSSFDLDFDSYGKSKARIVEPKFRMSLAELLDESKVVPVSVYGDLEIEITGIQHDSRIVTSGDLFVCCVGQKTDGHLFLTEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNAVLPVLAASFYKYPSKNMAVIGITGSYGKTSTTYLIKSMYEAMGLRTGMLNSVAYYVHGDNKLESSNMTPDAVLVQNLMATMLHNGTEAVVMETSSDALAKGKCDEVDIDIAVFTNLNQEEDRDAQAKLFSRMVDPERHRKVVNIDDQNASFFVSQGNPEVPVVTFAMENKSADVHPLKFELSLFETQVLVNTPSGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGKCELIDEEQAFGVIVDYARTPDALSRLLDFVRELGPRRIITVIGCCGEKERGKRPLMTKIATDKSEVTMLTSDNPMNEDPLDILDDMLAGVGWTMQDYLKHGENDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEEGDVVVVAGKGHETNEIEGDKKDFFDDREECREALQYVDELHQAGIDTSEFPWREPLIINAAVMNSEYHITCFPEHKLCKMKEDDLSAIRGLFVGDSESTR 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1208 798 TIGRFAM murE: UDP-N-acetylmuramyl-tripeptide synthetase 254 733 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Lal16g1208 798 MobiDBLite consensus disorder prediction 42 69 - -
Lal16g1208 798 MobiDBLite consensus disorder prediction 104 123 - -
Lal16g1208 798 Pfam Mur ligase family, catalytic domain 255 332 IPR000713 GO:0009058|GO:0016881
Lal16g1208 798 Pfam Mur ligase family, glutamate ligase domain 561 644 IPR004101 GO:0009058|GO:0016881
Lal16g1208 798 PANTHER UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE MURE HOMOLOG, CHLOROPLASTIC 210 746 - -
Lal16g1208 798 SUPERFAMILY MurE/MurF N-terminal domain 233 335 IPR035911 -
Lal16g1208 798 SUPERFAMILY MurD-like peptide ligases, catalytic domain 335 558 IPR036565 GO:0005524|GO:0009058
Lal16g1208 798 Gene3D - 566 744 IPR036615 GO:0009058|GO:0016881
Lal16g1208 798 Pfam Mur ligase middle domain 344 540 IPR013221 GO:0005524|GO:0009058|GO:0016881
Lal16g1208 798 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 561 733 IPR036615 GO:0009058|GO:0016881
Lal16g1208 798 MobiDBLite consensus disorder prediction 180 205 - -
Lal16g1208 798 Gene3D - 233 333 - -
Lal16g1208 798 Gene3D - 335 564 IPR036565 GO:0005524|GO:0009058
Lal16g1208 798 PANTHER MUR LIGASE FAMILY MEMBER 210 746 - -
Lal16g1208 798 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 232 732 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1208 - - qlo:115971280 1134.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1208 16 8400830 8404738 Lal16g1208 16 8400830 8404738 ECH