Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1197 ATGTTAACATACCAATACCTCAACTTAACTTCTGTTCTCCAAATAAACAAAACTCAGGACTTAGTCATGGATGTGTTATTATTATTACTAGCTCTTATGGTTGCTGCTTTACCATGCCTGAGTGTTGTGGAGAGCCGAAAATCTCCGGTACTGAACTCCTTCCAGTACTGTGCTGTGAGTTGTAGAGCTTTCGGCGCTTCGATTACCGATTTTGGAGGAGTTGGAGATGGAACAACTTTGAACACTAATGTGTTTCAGACTGCCATAGATCATTTGAGTCAGTACTCATCAAATGGTGGTTCTCAACTTTATGTTCCTCCAGGAAAATGGTTAACTGGAAGTTTCAATCTCACAAGTCATTTCACTTTATTCCTTCACAAGGATGCTGTGATTCTAGCCTCTCAGGATGAAAATGACTGGCCAGTGATTGATCCTCTGCCATCTTATGGTAGAGGGAGAGATACACAAGGTGGAAGGTTTAGCAGTCTAATTTTCGGAACCAACCTCACCGATGTCGTCATAACCGGGGATAATGGTACACTAGATGGACAAGGTGATCTATGGTGGCAGAAATTCCATAATGGAGAGCTCAAATATACAAGGCCTTACCTGATTGAGATCATGTACTCAACAAATGTTCAGATATCTAATCTCGTTTTGCTTAATTCTCCTTCCTGGAATGTTCATCCTGTTTATAGCAGCAATGTTATTGTTCAAGGCATCACAATTCTTGCTCCTGTGCATTCTCCAAATACGGACGGGATCAACCCTGACTCTTGCACAAACACACGCATTGAGGACTGTTACATTGTGTCCGGGGATGACTGCGTGGCCGTGAAGAGTGGCTGGGATGAGTATGGTATAGCTTATGGAATGCCAACCAAGCAACTAGTAATCAGACGTCTCACGTGTATTTCTCCAACCAGCGCTGTGATCGCTTTAGGGAGCGAGATGTCTGGCGGAATTCAAGATGTAAGGGCTGAGGACATTGTAGCCATCAATACAGAATCTGGTGTGAGGATAAAAACCGCCGTAGGAAGAGGGGGCTATGTTAAGGATATATATGTTAGAAGAATGACAATGAAAACAATGAAATGGGCATTTTGGATGACTGGAAATTATGGCTCTCATGCTGATAACAACTTTGATCCTAATGCACTGCCTGTGATTCAGAACATTAATTATCGCGATATGGTTGCTGAGAATGTGACTATAGCAGCAACATTGGAGGGTTTATCTAATGCACCATTTACTGGAATATGCATATCCAATGTAACTATTGAACTAGCAAAAAAGGCTAAAAAGGTTCCATGGACTTGCACTGATGTTGCTGGGATTTCGAGTGGTGTGACTCCTGCGCCATGTGATCTATTGCAAGACCAAGGGCCAGAGAAGATAGGGGCATGTACCTTCCCAGAATCCCCTTTGCCCATTGATGATGTTGAGGTTCAAACATGTACTTACTTTAGGAAGTTATGA 1479 0.4253 MLTYQYLNLTSVLQINKTQDLVMDVLLLLLALMVAALPCLSVVESRKSPVLNSFQYCAVSCRAFGASITDFGGVGDGTTLNTNVFQTAIDHLSQYSSNGGSQLYVPPGKWLTGSFNLTSHFTLFLHKDAVILASQDENDWPVIDPLPSYGRGRDTQGGRFSSLIFGTNLTDVVITGDNGTLDGQGDLWWQKFHNGELKYTRPYLIEIMYSTNVQISNLVLLNSPSWNVHPVYSSNVIVQGITILAPVHSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPTSAVIALGSEMSGGIQDVRAEDIVAINTESGVRIKTAVGRGGYVKDIYVRRMTMKTMKWAFWMTGNYGSHADNNFDPNALPVIQNINYRDMVAENVTIAATLEGLSNAPFTGICISNVTIELAKKAKKVPWTCTDVAGISSGVTPAPCDLLQDQGPEKIGACTFPESPLPIDDVEVQTCTYFRKL 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1197 492 Pfam Pectate lyase superfamily protein 67 124 IPR024535 -
Lal16g1197 492 SUPERFAMILY Pectin lyase-like 59 478 IPR011050 -
Lal16g1197 492 Pfam Glycosyl hydrolases family 28 154 442 IPR000743 GO:0004650|GO:0005975
Lal16g1197 492 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 27 489 - -
Lal16g1197 492 Gene3D - 53 446 IPR012334 -
Lal16g1197 492 PANTHER PECTIN LYASE-RELATED 27 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1197 Lal-Chr16 8238348 8243218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1197 13 488 Glycoside Hydrolase AT3G61490 66.874 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1197 - - gmx:100785841 852.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1197 16 8238348 8243218 Lal16g1197 16 8238348 8243218 ECH