Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1188 ATGGACCAATCTCGATTATTGTCTAAGATAGCCATGGGTAATGGACATGGTGAAGACTCACCATATTTTGATGGATGGAAAGCTTATGATGAAAACCCTTATCACCCCACCATGAATCCTAATGGGGTCATCCAAATGGGTCTAGCAGAAAATCAGCTTACTTCTGATTTGGTAGAAGATTGGATAATGAGTAATCCAGAAGCATCCATTTGCACTCTAGAGGGAGTGCATAATTTCAAGGCCATTGCTAACTTTCAGGACTATCATGGTCTTTCAGAGTTTAGAAATGCTGTGGCTAAATTCATGTCAAGAACAAGAGGGAATAGAGTCACATTTGACCCTGACCGTATTGTCATGAGTGGTGGAGCAACTGGAGCACACGAAGTCACTGCTTTTTGTTTGGCAGATCCTGGTGATGCATTTTTGGTGCCTACTCCTTATTATGCAGGATTTGATAGAGACTTGAGGTGGAGAACAGGAGCACAACTTGTTCCAGTTGTTTGTAAAAGTTCCAACAATTTCAAATTAACAAAGCAAGCATTGGAAGAAGCTTATGAGAAAGCCAAGGAAGATAACATCAGAGTAAAAGGGTTACTCATCACTAATCCATCAAACCCATTAGGCACTACAATGGACAGAACTACATTAAGAACCTTGGTGAGTTTCATAAATGAAAAAAGAATCCACCTAGTATGTGATGAAATATATGCTGCAACAATTTTCACCCATCCTGATTTCATAAGCATAGCTGAGATCATAGAACAAGACACAGACATCGAATGCGACCGCGACCTCATTCACATTGTTTATTCTCTTTCAAAGGACATGGGTTTCCCTGGCTTCAGAGTTGGCATAATTTACTCCTACAATGATGAAGTAGTCCAATGCGCACGCAAAATGTCGAGCTTTGGACTAGTTTCCACACAGACACAGTATCTTTTAGCATCAATGCTATCCGATGATGAGTTTGTCGAAAAGTTTCTAACAGAAAGCGCGAAGAGGTTAGCACAAAGGCATAGAGTTTTCACAATGGGGCTAGCAAGGGTTGGCATAAAGTGCTTACAAAGCAATGGTGGCCTATTTGTGTGGATGGATTTGCACCATCTTTTGAAAAGTCAAAGTTTTGAAGCAGAAATGGAGCTATGGAAAGTAATCATTCATGAAGTTAAGATCAATGTCTCACCTGGGTCATCTTTTCATTCCTCTGAGCCAGGGTGGTTTAGGGTATGCTATGCTAACATGGATGATAAAGCAGTGCAAGTTTCTTTGCAAAGGATTAGAGCCTTTGTGCTTCAGAATAAGGACCTAATGGTGTCTGAGAAGAAACGTTGCTGGCATAGTGATTTAAGGTTAAGCTTCAAATCAAGAAGATTTGATGATATAATGATGTCACCTCATTCCCCTATTCCTCACTCACCTCTAGTTAAAGCCTCTACTTGA 1440 0.4042 MDQSRLLSKIAMGNGHGEDSPYFDGWKAYDENPYHPTMNPNGVIQMGLAENQLTSDLVEDWIMSNPEASICTLEGVHNFKAIANFQDYHGLSEFRNAVAKFMSRTRGNRVTFDPDRIVMSGGATGAHEVTAFCLADPGDAFLVPTPYYAGFDRDLRWRTGAQLVPVVCKSSNNFKLTKQALEEAYEKAKEDNIRVKGLLITNPSNPLGTTMDRTTLRTLVSFINEKRIHLVCDEIYAATIFTHPDFISIAEIIEQDTDIECDRDLIHIVYSLSKDMGFPGFRVGIIYSYNDEVVQCARKMSSFGLVSTQTQYLLASMLSDDEFVEKFLTESAKRLAQRHRVFTMGLARVGIKCLQSNGGLFVWMDLHHLLKSQSFEAEMELWKVIIHEVKINVSPGSSFHSSEPGWFRVCYANMDDKAVQVSLQRIRAFVLQNKDLMVSEKKRCWHSDLRLSFKSRRFDDIMMSPHSPIPHSPLVKAST 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1188 479 Coils Coil 171 198 - -
Lal16g1188 479 Pfam Aminotransferase class I and II 44 426 IPR004839 GO:0009058|GO:0030170
Lal16g1188 479 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 3 441 - -
Lal16g1188 479 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 3 441 - -
Lal16g1188 479 Gene3D Aspartate Aminotransferase, domain 1 32 425 IPR015422 GO:0003824
Lal16g1188 479 SUPERFAMILY PLP-dependent transferases 16 430 IPR015424 -
Lal16g1188 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 46 72 - -
Lal16g1188 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 79 95 - -
Lal16g1188 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 116 136 - -
Lal16g1188 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 138 159 - -
Lal16g1188 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 192 216 - -
Lal16g1188 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 228 251 - -
Lal16g1188 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 265 289 - -
Lal16g1188 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 297 320 - -
Lal16g1188 479 Gene3D - 66 320 IPR015421 GO:0003824
Lal16g1188 479 CDD AAT_like 84 428 - -
Lal16g1188 479 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 271 284 IPR004838 GO:0003824|GO:0009058|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1188 Lal-Chr16 8178715 8182004 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1188 K20772 - gmx:547976 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1188 16 8178715 8182004 Lal16g1188 16 8178715 8182004 ECH
Lal16g1188 16 8178715 8182004 Lal15g1415 15 16288971 16292640 LSH