Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1145 GAAGCTGGCCAACATAAACCTTTGACTATTGCTGCACCTTTGAAGGAAACACTTTCATGTACTGTCCATTGTTCAATATCTCAGAAAGGTTATAGCTCGGACAGCTATTTTAACATTGTGCTAGATATTATCTCCATTGCTATGAGCTGTTTTTTCTTTAAGAAATCTAGATCAAAGATTAAGCAAGAACAATCCATCATTCTTGCTTCGGAGACATACTTCACTGAGAATGAGGTTGAGGCCTTGCTTCACTTGTTTAAGAAACTAAGCAGTGCAATTATTGATGATGGCCTTATTCAGAAGGAGGAGTTTCGACTTGCGCTTCTTAGAGATAGTAAAAAGCCGAATCTATTTGCAGACAGGGTATTTGATATGTTTGATATTAAGCGTAACGGAGTAATCGACTTTGGGGAATTCGTTCGCTCAATGAGCATCTTTCATCCAAATGCCTCAGAAGAAAGGAAAATTGAATATTCATTTAGATTGTTCGATCTTCGGCAGACCGGATACATAGAACATATTCAGTTGAAGGAGATGGTATTGGCTACACTGATTGAATCAGATGTAACACTCACTGATGATATTGTTGAGTCAATTGTGGAAAAGTCAATCAAGGAAGCTGACACAAATGGAGATGGGAAAATTGATAAAGAAGAGTGGAAAGAATATGTTGCAAAAAATCCTTCTATTTTGAAGATCATGACTCTACCATATCTTAAGGAGATAACTTTGGCATTTCCTAGCTTTGTTTTGCACTCTCAGATGGAAGACTAG 774 0.3734 EAGQHKPLTIAAPLKETLSCTVHCSISQKGYSSDSYFNIVLDIISIAMSCFFFKKSRSKIKQEQSIILASETYFTENEVEALLHLFKKLSSAIIDDGLIQKEEFRLALLRDSKKPNLFADRVFDMFDIKRNGVIDFGEFVRSMSIFHPNASEERKIEYSFRLFDLRQTGYIEHIQLKEMVLATLIESDVTLTDDIVESIVEKSIKEADTNGDGKIDKEEWKEYVAKNPSILKIMTLPYLKEITLAFPSFVLHSQMED 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1145 257 PANTHER CALCINEURIN B 48 256 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lal16g1145 257 ProSitePatterns EF-hand calcium-binding domain. 208 220 IPR018247 -
Lal16g1145 257 Pfam EF-hand domain pair 154 223 IPR002048 GO:0005509
Lal16g1145 257 Pfam EF-hand domain pair 96 143 IPR002048 GO:0005509
Lal16g1145 257 PRINTS Recoverin family signature 60 74 - -
Lal16g1145 257 PRINTS Recoverin family signature 122 143 - -
Lal16g1145 257 PRINTS Recoverin family signature 169 187 - -
Lal16g1145 257 PRINTS Recoverin family signature 215 235 - -
Lal16g1145 257 SUPERFAMILY EF-hand 69 249 IPR011992 -
Lal16g1145 257 ProSiteProfiles EF-hand calcium-binding domain profile. 195 230 IPR002048 GO:0005509
Lal16g1145 257 SMART efh_1 199 227 IPR002048 GO:0005509
Lal16g1145 257 SMART efh_1 118 146 IPR002048 GO:0005509
Lal16g1145 257 Gene3D - 67 257 - -
Lal16g1145 257 ProSiteProfiles EF-hand calcium-binding domain profile. 114 149 IPR002048 GO:0005509
Lal16g1145 257 ProSiteProfiles EF-hand calcium-binding domain profile. 151 186 IPR002048 GO:0005509
Lal16g1145 257 PANTHER CALCINEURIN B-LIKE PROTEIN 8 48 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1145 Lal-Chr16 7813566 7817811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1145 48 257 EF-hand Containing Proteins AT4G17615 56.190 1.95e-87 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1145 K06268 - egr:104441667 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1145 16 7813566 7817811 Lal16g1145 16 7813566 7817811 ECH