Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1023 ATGTATGGCGGTGACGAAGTATCAGCGATAGTGATTGACCTTGGGTCCCACACTTGCAAAGCTGGTTACGCTGGTGAAGATGCTCCTAAAGCTGTGTTCCCATCTGTTGTTGGTGCAATCGATCAAATGGACATCGATGGGCATGGTGATGCTGCAGAGAACATGGGAGCGGCTGTGGAGATACAAAACAATGCTAAAAATCTTGATTCAGAGAAAACCAAGGGAAAATGCAAACTCTATGTAGGATCTCAGTCCTTAGGATACCGTAGGGATCATATGGAGGTATTGTCACCATTAAAGAATGGAGTTGTCGTTGACTGGAATATTGTAGACAACATATGGGATCATGCTTTGAGGGAATGTTTATTAGTTGATCCCAAAGAGCGTCCGATGCTACTTGCCGAACCATGTTCTAATACCCAAGAACAGAGAGAAAGGACAGCAGAACTTATGTTTGAAAAGTACCAAGTACCTGCACTGTTTTTGGCTAGGAATGCTGTCCTCACATCTTTTGCTTCAGGGCGTGCTACATCATTAGTTATCGACTGTGGTGGAGGATCAACTACGGTTGCACCAGTACTCGATGGCTATGTTCTTCACAAGGGTGTGACAACTTCCCCTATTGGAGGAGACTTTCTGACAGAATGCTTGATGAAAAGTTTGGAAGGCAAAGGTATCAGAATAAGACCCCGGTATTCATTCAAGAAAAAGGAAATAAGGCCTGGAAATCTTCAGGCTATAAACCTTGATTTTCCACACACAACAGAAAGTTACAAAGTCTACTCCCAGAGGGTGATTGCTAGTGATATCAAGGAATGTGTTTGCCGAGCACCAGATTCTCCATATGATGGTTTGTGCTCGGTTGTTATAAATTCATATAATGTTCTGAACCTCATTGAGAGTGCATATGCTAACATTCCAACGACCTCATATGAGCTTCCCGATGGCCAGATAATTGAAATTGGATCTGACAAGTTCAAGATTCCTGATATTCTTTTTAATCCATCATTAGTTCAGACAATCCCTGGCATGGAGAGTTTTGCAGGAATTGCTCCTTCAATCCGTGGTCTTCCAAAAATGGTTATAGACAGCATTAATAAGTGTGATGTGGACATTCGAAGAGAACTATTTAGTAGCATACTGCTTGCTGGTGGTACAGCTTCAATGCAACAATTGAAGGAACGCATTGAGAAAGACTTGCTAGAGGAGTCCCCTCAAGCTGCTAGAGTAAAAGTAATTGGCAGTGGAAATGCAACTGAAAGAAGGTTCAGTGTTTGGATTGGGGGCAGTATATTGGCTTCTCTTGGATCTTTCCAGCAAATGTGGTTCTCTAAGTCTGAGTATGAAGAGCAAGGTGCTTCCTATATCCAAAGAAAGTGCCCTTGA 1386 0.4257 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDGHGDAAENMGAAVEIQNNAKNLDSEKTKGKCKLYVGSQSLGYRRDHMEVLSPLKNGVVVDWNIVDNIWDHALRECLLVDPKERPMLLAEPCSNTQEQRERTAELMFEKYQVPALFLARNAVLTSFASGRATSLVIDCGGGSTTVAPVLDGYVLHKGVTTSPIGGDFLTECLMKSLEGKGIRIRPRYSFKKKEIRPGNLQAINLDFPHTTESYKVYSQRVIASDIKECVCRAPDSPYDGLCSVVINSYNVLNLIESAYANIPTTSYELPDGQIIEIGSDKFKIPDILFNPSLVQTIPGMESFAGIAPSIRGLPKMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERIEKDLLEESPQAARVKVIGSGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEQGASYIQRKCP 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1023 461 SMART actin_3 7 461 IPR004000 -
Lal16g1023 461 CDD NBD_sugar-kinase_HSP70_actin 97 203 - -
Lal16g1023 461 Gene3D - 4 190 - -
Lal16g1023 461 Gene3D - 338 419 - -
Lal16g1023 461 SUPERFAMILY Actin-like ATPase domain 5 181 IPR043129 -
Lal16g1023 461 PANTHER - 2 460 - -
Lal16g1023 461 Gene3D - 420 461 - -
Lal16g1023 461 Gene3D Actin; Chain A, domain 4 208 337 - -
Lal16g1023 461 PANTHER ACTIN 2 460 IPR004000 -
Lal16g1023 461 Pfam Actin 4 460 IPR004000 -
Lal16g1023 461 SUPERFAMILY Actin-like ATPase domain 174 460 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1023 Lal-Chr16 6813987 6822776 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1023 1 460 Miscellaneous Gene Families AT3G53750 33.696 5.70e-86 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1023 K11340 - gmx:100819549 764.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1023 16 6813987 6822776 Lal16g1023 16 6813987 6822776 ECH