Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1020 ATGTCTCGAATCTTCGAGTACTTCGTGGTTTGCGGGATCGGACCGGAGATTCGAACCGTTGACGGTAACAAAGGCTACCATGGAACCGGTTGTTTCTACCTTCCTTCTCTTCTTGACCAGTATCCTCCTTCGGACCACACTCTCTACCCTCCTCCGCCTCCTCAGCTTCCTACTTGTGTTCTACCGGCTGGTGTTGAAATATATTCTTCAGGATTTGATTCCAATGATCCTTCCACATTTCCACGGAGCTATCCCATCGTTTTGACCGAGGGAGATGGTTCAAAAATCTATGTTAGCTGCATTTCTTTCCGGGATCCGGTTTGTGAGGATATTGCAGAGGCCTACCACATACAGGCAAATTCATATGCTGAAAAGTGCATCTGTCTTGTTTCACGGTTGCCAAGTTTCCGTGTGCTTAGGAGTGCTTTGGAGGAGCTATTTGCTCTGTGTTTTTCCCCAAACGGAAGTAGCAAGCCATTATGGGATGTTATAGCACATATGGTGTCCAGTGTGCCTTTGCCAACTCCTGGAAAGGAGAGAGTTCTTTTTGCTATTGACAGTTGTCTGCTTTCTGTAGAGTCTCCACCAATCGATGGGCTTCCCCATGTCGATATATCATTTCAGCCTCTGGTGCAGTGCTTGGATGTTGATAATTTAATGAGACTTTTTACAGCAGTGTTGCTTGAGAGGAGGATTTTACTTCGAGCTAACAAGTATTCGCTTCTAACTCTTGCATCAGAGGCCATTTGTCACTTAATCTACCCATTCCGATGGCAGCATGTATACATTCCGTTGCTGTTTTTCAGTGGAGTAGATTATATCGATGCTCCTACACCATATATGATGGGCCTCTATTCGGGCGTTGATACCTCTACTCTGTCAATGGATGGTGTAGTTGTTGTGGATCTTGAATATAATCGTATCACTACATCAGAAGAAATCCCACCTATTCCTGAGCCAGAACTCAGCTTTTTGCGTGGTGAGATAACGAAGTTACTATATCCCAATGTAATTGGAATTGATGCGATGAATACTGGAATATGGAGTGTACCTGAGCATTATCCTAAATCCGGGGCTAAGCAATGGGGAGAAGATCACGACCTTCAGCTCAGGCTGATATTCCTAAAGTTCTTTGCAACACTTTTAAGTGGCTATCGCAATTTCCTCGAAAATGGTGCTACTAATGTATTCAACACTCAAGCGTTTCTGAAGAAGCGTTCTCGAGCTACAAACCAACCATCAGAACCCATGATAGCTCAGTTCCTTGACTCTCATGGTTTCTTGGATTATTTAGAGAGGGGGTTAGGTTCTGATGAAAACAGCAATAACTTGCTTGATAAGCTACAAGATGCAATGGGAAGGGGCCAAAACCCTATGTCAATCCTTCCTTCGTCTTTAGTAGAGCCTGAGATTTTAACAGTATCAGATTCTGATATTGGACTATCAGGGTCTGGTGCCAAATACACTTATGATAGGTTTCCCTCAAACATCAGAACTGAAGAGCAAGAAGAAAAGAGGAAGCAGATTCTTGCAGCAGTTAGTAATGCCTTTGAGTACTCGGGAAGACATGCACCAAGTAAGGATCCTTTAGCAGATGCTCTTAGTCCGCTTGAGAGAGCTGCAGAAAGGGAGCGCATGGTTCTGGATATTAAGGTTAAACTGCAGGGTTTATGGTTGCGGCTTCTTAAACTGGGAGCAACAGATGATCCTCTCTCTTCCTTTGAATATGGAACAATACTTGCTTTGATTGAATCTGATGCAGAAGGGATTGGCGGTAGTGGTTTTGTTGAATGCATAAGTGAGCATATTCATTCGGGTTGGCACTGTCAGCTCACTGACGAACAGTTTATTGCTGTGAAAGAATTGCTCAAAACAGCTATCAATCGCGCAACATCACGAAATGACTGGTTGACCATTAGAGATGCCCTTGAAGTTTCTTCTGATATGTATAAGAAAGATAATAATAATGTGCCGGACTATGTTCAGCGCCATCTTATTTCTCTTTCTATTTGGGAAGAATTACGGTCAGCCAACTATGCATCTCTAGTGACAGCACAGCTTGTTGTGTTGGCATCACACATGGCTGGGTTGGGACTTCCTGATAATGATGCTTGGTACATGCTCGAAACAATTGCAGAAAGGAACAACATTGGATCCAAACAGTTTATAAAAATTAGAGGGTTCTTATCTCATATCCAACAACTACGTAATGGATACTGGGGAATCTCCTCAATGAAAGCACAGTCTGTGTTATCACTTGCATTACCATCCCCACATTCAAAAGATGTGAATGATGAGGACCAGCAACCTGCTGAGGCAACTGGTGTCGGTAGAAACTGGGTGCAAAGTATGTTCACCCGAAATTCAACATCTAGATCCAGCTCATTTAATCGTGTCCGTAGATGGACTTCGGATGGAGGCAATTCAGCACATGAGAATGGAACTCCTCGCAAGCAAGATCTAACAACCGGTGGGCAGAAGAAGCTTCAAACCAATGTTCGTATACTTAGGGGTCATAATGGTGCCATCACTGCTCTCCATTGTGTTACAAAAAGAGAGGTTTGGGATTTGGTGGGTGATCGTGAAGATGCTGGTTTCTTTATTAGTGGAAGCACAGACTGCTCTGTTAAAATCTGGGATCCCAGCCTTCGTGGTTCTGAACTCAGGGCAACTTTAAAAGGACATACTAGAACTGTCCGTGCTATAAATTCAGATAGGGGGAAGGTGGTGTCAGGATCTGATGATAAGTCTGTTTTGGTGTGGGATAAGCAAACAACTCAACTTCTAGAAGAGCTTAAAGGCCATGATGGACCGGTCAGTTGTGTACGCATGCTCTCAGGTGAACGTGTCCTAACTGCATCCCATGATGGCACTGTGAAGATGTGGGATGTTAGAACTGATAGATGTGTTGCAACTGTTGGCCGTTGTTCTAGTGCTGTTTTATGCATGGAATATGATGACAATGTAGGACTCTTGGCTGCATCTGGAAGAGACGTTGTTGCTAATATATGGGACATTCGTGCTGGTAAGCAGATGCATAAACTTTCAGGACATACTCAATGGATACGGTCTATAAGAATGGTTGGCGACACTTTAATTACTGGTAGTGATGATTGGACAGCAAGGATATGGTCTGTTTCCCGAGGAACTTGCGATGCTGTCCTAGCATGCCATGCCGGGCCAATACTATGTGTTGAATATTCTTCTTTAGACAGAGGAATAATGACAGGGTCAAGTGATGGTCTCCTACGGTTTTGGGAAAATGATGAGGGAGGTATTAGATGTGCAAAAAATGTAACAATTCACAATGCTGCCATACTCTCTATAAATGCTGGGGAGCACTGGTTAGGTATTGGAGCAGCTGATAATTCTCTGTCTCTCTTTCATCGGCCCCAAGAAAGACTAGGTGGTTTCTCTGGCACTGGGTCCAAGATGGCTGGTTGGCAGCTTTACAGAACACCACAAAAAACAGTCGCTATGGTGAGATGCATTGCTTCGGACCTGGAGAGGAAAAGGATATGCAGCGGTGGTCGTAATGGGCTTTTAAGACTGTGGGATGCGACCATCAATATTTGA 3576 0.4393 MSRIFEYFVVCGIGPEIRTVDGNKGYHGTGCFYLPSLLDQYPPSDHTLYPPPPPQLPTCVLPAGVEIYSSGFDSNDPSTFPRSYPIVLTEGDGSKIYVSCISFRDPVCEDIAEAYHIQANSYAEKCICLVSRLPSFRVLRSALEELFALCFSPNGSSKPLWDVIAHMVSSVPLPTPGKERVLFAIDSCLLSVESPPIDGLPHVDISFQPLVQCLDVDNLMRLFTAVLLERRILLRANKYSLLTLASEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLYSGVDTSTLSMDGVVVVDLEYNRITTSEEIPPIPEPELSFLRGEITKLLYPNVIGIDAMNTGIWSVPEHYPKSGAKQWGEDHDLQLRLIFLKFFATLLSGYRNFLENGATNVFNTQAFLKKRSRATNQPSEPMIAQFLDSHGFLDYLERGLGSDENSNNLLDKLQDAMGRGQNPMSILPSSLVEPEILTVSDSDIGLSGSGAKYTYDRFPSNIRTEEQEEKRKQILAAVSNAFEYSGRHAPSKDPLADALSPLERAAERERMVLDIKVKLQGLWLRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECISEHIHSGWHCQLTDEQFIAVKELLKTAINRATSRNDWLTIRDALEVSSDMYKKDNNNVPDYVQRHLISLSIWEELRSANYASLVTAQLVVLASHMAGLGLPDNDAWYMLETIAERNNIGSKQFIKIRGFLSHIQQLRNGYWGISSMKAQSVLSLALPSPHSKDVNDEDQQPAEATGVGRNWVQSMFTRNSTSRSSSFNRVRRWTSDGGNSAHENGTPRKQDLTTGGQKKLQTNVRILRGHNGAITALHCVTKREVWDLVGDREDAGFFISGSTDCSVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDKSVLVWDKQTTQLLEELKGHDGPVSCVRMLSGERVLTASHDGTVKMWDVRTDRCVATVGRCSSAVLCMEYDDNVGLLAASGRDVVANIWDIRAGKQMHKLSGHTQWIRSIRMVGDTLITGSDDWTARIWSVSRGTCDAVLACHAGPILCVEYSSLDRGIMTGSSDGLLRFWENDEGGIRCAKNVTIHNAAILSINAGEHWLGIGAADNSLSLFHRPQERLGGFSGTGSKMAGWQLYRTPQKTVAMVRCIASDLERKRICSGGRNGLLRLWDATINI 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1020 1191 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 932 966 - -
Lal16g1020 1191 PANTHER C-MYC PROMOTER BINDING PROTEIN 3 1191 - -
Lal16g1020 1191 Pfam DENN (AEX-3) domain 123 304 IPR001194 -
Lal16g1020 1191 PANTHER DENN DOMAIN-CONTAINING PROTEIN 3 3 1191 - -
Lal16g1020 1191 Gene3D - 1 176 - -
Lal16g1020 1191 SMART dDENN_cls 366 434 IPR005112 -
Lal16g1020 1191 Gene3D - 202 387 IPR043153 -
Lal16g1020 1191 ProSiteProfiles Trp-Asp (WD) repeats profile. 862 880 IPR001680 GO:0005515
Lal16g1020 1191 MobiDBLite consensus disorder prediction 775 826 - -
Lal16g1020 1191 Gene3D - 793 1009 IPR015943 GO:0005515
Lal16g1020 1191 SMART DENN_cls 122 306 IPR001194 -
Lal16g1020 1191 ProSiteProfiles Trp-Asp (WD) repeats profile. 932 972 IPR001680 GO:0005515
Lal16g1020 1191 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1055 1087 - -
Lal16g1020 1191 ProSiteProfiles Trp-Asp (WD) repeats profile. 977 1014 IPR001680 GO:0005515
Lal16g1020 1191 PRINTS G protein beta WD-40 repeat signature 909 923 IPR020472 -
Lal16g1020 1191 PRINTS G protein beta WD-40 repeat signature 950 964 IPR020472 -
Lal16g1020 1191 PRINTS G protein beta WD-40 repeat signature 1032 1046 IPR020472 -
Lal16g1020 1191 ProSiteProfiles Tripartite DENN domain profile. 18 441 IPR037516 -
Lal16g1020 1191 ProSitePatterns Trp-Asp (WD) repeats signature. 950 964 IPR019775 -
Lal16g1020 1191 Pfam WD domain, G-beta repeat 927 963 IPR001680 GO:0005515
Lal16g1020 1191 Pfam WD domain, G-beta repeat 1009 1045 IPR001680 GO:0005515
Lal16g1020 1191 Pfam WD domain, G-beta repeat 890 922 IPR001680 GO:0005515
Lal16g1020 1191 Pfam WD domain, G-beta repeat 1050 1086 IPR001680 GO:0005515
Lal16g1020 1191 Pfam WD domain, G-beta repeat 831 880 IPR001680 GO:0005515
Lal16g1020 1191 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 892 922 - -
Lal16g1020 1191 ProSiteProfiles Trp-Asp (WD) repeats profile. 1055 1087 IPR001680 GO:0005515
Lal16g1020 1191 Gene3D - 1010 1191 IPR015943 GO:0005515
Lal16g1020 1191 MobiDBLite consensus disorder prediction 757 826 - -
Lal16g1020 1191 SMART WD40_4 1147 1186 IPR001680 GO:0005515
Lal16g1020 1191 SMART WD40_4 1008 1045 IPR001680 GO:0005515
Lal16g1020 1191 SMART WD40_4 885 922 IPR001680 GO:0005515
Lal16g1020 1191 SMART WD40_4 966 1005 IPR001680 GO:0005515
Lal16g1020 1191 SMART WD40_4 925 963 IPR001680 GO:0005515
Lal16g1020 1191 SMART WD40_4 1048 1087 IPR001680 GO:0005515
Lal16g1020 1191 SMART WD40_4 1092 1129 IPR001680 GO:0005515
Lal16g1020 1191 SMART WD40_4 829 880 IPR001680 GO:0005515
Lal16g1020 1191 Pfam uDENN domain 35 103 IPR005113 -
Lal16g1020 1191 SUPERFAMILY WD40 repeat-like 831 1187 IPR036322 GO:0005515
Lal16g1020 1191 ProSitePatterns Trp-Asp (WD) repeats signature. 1173 1187 IPR019775 -
Lal16g1020 1191 CDD WD40 832 1128 - -
Lal16g1020 1191 SMART uDENN_cls 1 104 IPR005113 -
Lal16g1020 1191 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1015 1049 - -
Lal16g1020 1191 ProSiteProfiles Trp-Asp (WD) repeats profile. 892 931 IPR001680 GO:0005515
Lal16g1020 1191 ProSiteProfiles Trp-Asp (WD) repeats profile. 1015 1054 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1020 Lal-Chr16 6782393 6802541 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1020 827 1138 Acyl Lipid Metabolism Gene Families AT3G18860 27.389 1.55e-17 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1020 - - gmx:100818305 2199.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1020 16 6782393 6802541 Lal16g1020 16 6782393 6802541 ECH