Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1007 ATGAGGTCTTCATCAGAGACAATCAACATCGCTGCTAGTACTCAGAAACTCGATGTCGATAATCGAATTGCCCTTCGATTTTACTATAGGATCGCTGATAATATCCTCAGACAGGCTGATATCTTTCGTTCAGAGAAAAATATTGTTGATCTATATGTCATGCTTCTGAGATATTCTAGTTTGGTGTCTGATACAATTCCTCGTCACCGAGATTATAGAACTTCTCCACAAAGACAGAAAGAACTATTGAGAAAGAGATTGTTAAATTCTGTGATTGAACTGGAGAAGTTGAAACCAGTGGTACAACAGAAGATCAATGAGTTTAACAGCAGGCAAACATACCAATCCAATAGGAGGGAAAACAATCATTCAAATAATTTCATGGATTTCTCTCCAGTGAAAAAGAAAACTTTGACTAGTTATGATCAAATAAAGGAAAAATTCGCACCGAAGGTGGCAGTCAGACCAACAGCTGGAGATTTTGCCTACCAAGGATCAAGGAGCCAGCAGGTTTCATATATAAGACCTGTGGATGAGAATATGAGAAGACTATCTCTAACTCTCCCACGTCCAAGGGAGGAAACCCTCTCTAAACATTCTATTCTAGGTCCCAGTGGGCTTAAAGGGCAGTGGCGTCCGCCTATAAGTGATAAAGGGGTCAGGTATCCAACCATTACAGATCTGTCTCCCGTAGAAATTCCAAGCTTGCAACAATCCAATGAAGATGTATCTCTGAATAAACAAGATAGTAGCATTTCAGAACACAATATTTCAGATTTAGAATCAATTCTTACCCAGAGTGAGGACTGCCAGGCCAAGCATGCTGATGAACCTCCTTCACTTATCTCTTTTGAAGAAACAGAAATCCCTCCTCCTACAACAGAACTTATCAGACAGCCTTCTCCTCCACCTGTACTTGCTGAAGTACAAGATTTGGTTCCTGCAGTGTCACCTCATGCTCATGAGGTCGGATGCAAGACAGAGACTCCGTCATCAGATAGTTTTGTTCGTGCCGAGACTCCTCTGCAATTACACATTTCAACTACTATGATGGAGAATTTTATGAAGCTTGCCAAGTCAAATACCCAAAAAGATTTGGAGACTTGTGGTATCCTTGCGGGTGTGCTTAAAAACAGAAAGTTTTACATCACAGCTCTAATAATCCCAAAGCAGGAGGCAACATCAAGTTCTTGTCAAGCTACAAATGAAGAGGAAATATTTGAAGTACAGGATACACGATCTCTTTTCCCCCTTGGATGGATCCATACACATCCAACACAATCCTGCTTCATGTCATCAATTGATGTACACACCCATTACTCATATCAGATTATGCTGCCAGAATCTGTTGCAATAGTCATGGCGCCAACCGACAGTTCAAGAAAACATGGCATTTTTCGGTTGACAACCCCGGGTGGCATGTCGGTAATTAGGAAATGCGAGCAACGCGGCTTTCATCCACATGATCAACCTCCAGATGGTGGTCCCATTTATGATACATGTACAGATGTTTACATGAATCCAGATTTAAAATTTGATGTCATTGATCTTCGATGA 1557 0.4104 MRSSSETINIAASTQKLDVDNRIALRFYYRIADNILRQADIFRSEKNIVDLYVMLLRYSSLVSDTIPRHRDYRTSPQRQKELLRKRLLNSVIELEKLKPVVQQKINEFNSRQTYQSNRRENNHSNNFMDFSPVKKKTLTSYDQIKEKFAPKVAVRPTAGDFAYQGSRSQQVSYIRPVDENMRRLSLTLPRPREETLSKHSILGPSGLKGQWRPPISDKGVRYPTITDLSPVEIPSLQQSNEDVSLNKQDSSISEHNISDLESILTQSEDCQAKHADEPPSLISFEETEIPPPTTELIRQPSPPPVLAEVQDLVPAVSPHAHEVGCKTETPSSDSFVRAETPLQLHISTTMMENFMKLAKSNTQKDLETCGILAGVLKNRKFYITALIIPKQEATSSSCQATNEEEIFEVQDTRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPTDSSRKHGIFRLTTPGGMSVIRKCEQRGFHPHDQPPDGGPIYDTCTDVYMNPDLKFDVIDLR 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1007 518 PANTHER AMSH-LIKE PROTEASE 2 518 - -
Lal16g1007 518 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 342 447 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lal16g1007 518 MobiDBLite consensus disorder prediction 111 130 - -
Lal16g1007 518 ProSiteProfiles MPN domain profile. 344 474 IPR037518 -
Lal16g1007 518 SMART pad1_6 343 471 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lal16g1007 518 Gene3D Cytidine Deaminase, domain 2 326 518 - -
Lal16g1007 518 Gene3D - 1 128 - -
Lal16g1007 518 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 2 518 - -
Lal16g1007 518 SUPERFAMILY USP8 N-terminal domain-like 22 122 - -
Lal16g1007 518 SUPERFAMILY JAB1/MPN domain 343 474 - -
Lal16g1007 518 CDD MPN_AMSH_like 343 518 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Lal16g1007 518 Pfam USP8 dimerisation domain 9 103 IPR015063 -
Lal16g1007 518 MobiDBLite consensus disorder prediction 191 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1007 Lal-Chr16 6702608 6708719 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1007 K11866 - gmx:100800636 833.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1007 16 6702608 6708719 Lal16g1007 16 6702608 6708719 ECH