Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1001 ATGGTTCTCTTCAACGTTTCCCGCAAAGACACTACTCCCTTCGATGGCCAGAAACCTGGAACCTCTGGTCTCCGCAAGAAGGTGAAAGTATTCATCCAACCTAATTACCTGGAAAACTTTGTTCAGGCTTCATTCAATGCCCTAACTGCAGAAAAAGTTAGAGGTGCAACACTAGTTGTATCTGGTGATGGTCGTTACTATTCAAAGGAAGCTATTCAGATCATAACTAAAATGTCAGCAGCAAATGGAGTAAGACGTGTTTGGATTGGTCAAAATGGATTGCTTTCCACTCCCGCTGTATCTGGTGTTATACGTGAAAGAGTAGGGCCTGATGGATCAAAGGCAAATGGCGCATTTATACTGACGGCAAGCCACAATCCTGGTGGCCCTAATGAGGATTTTGGGATTAAGTATAACATGGAAAATGGTGGACCAGCACCAGAAGGAATTACTAACAAGATATATGAATACACAACGACAATTAAGGAATATTTTATTGCTGAAGATCTGCCAGATGTGGATATTACCACAACAGGTGTTACAAACTTTACAGGCCCTGAAGGACCGTTTGATGTTGAGGTTTTTGATTCAGCGAGTGATTATGTAAAATTGATGAAGTCAATTTTTGATTTTGAGTCTCTCAGGAAACTGCTGTCATCTCCTAAATTTACATTCTGTTATGATGCACTGCATGGAGTTGGTGGAGCTTATGCAAAGCGTATTTTTGTGGATGAGCTTGGGGCACAAGAAAGTTCTTTATTGAACTGTACACCAAAGGAAGACTTCGGAGGAGGACACCCAGATCCCAATTTGACATACGCCAAAGAGTTGGTTGCTCGCATGGGATTGAGCAAAACAGAATCTCAAGGTGAGCCCCCTGAGTTCGGTGCTGCTGCTGATGGTGATGCAGATCGTAACATGATACTCGGAAAAAGGTTTTTCGTCACTCCTTCAGATTCTGTGGCTATCATTGCTGCAAATGCTGTTGAAGCTATACCATACTTTTCTGCTGGCTTAAAGGGAGTTGCCAGGAGCATGCCAACCTCTGCTGCCCTGGATGTTGTAGCCAAAAGCTTAAACTTGAAATTCTTTGAGGTCCCCACAGGTTGGAAGTTCTTCGGTAATTTAATGGATGCTGGATTATGTTCAGTCTGTGGTGAAGAAAGTTTTGGAACTGGTTCTGACCATATTCGTGAGAAAGATGGAATCTGGGCGGTTTTGGCCTGGCTATCTATACTTGCATATAAAAATAAAGACAAGATTGAAGACAAGCTTGTAACAGTTGAAGACATAGTTCGCCAGCATTGGGCTACTTATGGGCGCCACTATTATACTCGATATGACTATGAAAATGTAGATGCTGCTGCAGCAAAGGAACTGATGGCATATTTGGTCAAACTGCAGTCCTCACTTTCCGAAGTCAATCAGATTATCAAGGGAATAAGGTCAGATGTTTCAAATGTCGCCCACGCTGATGAGTTTGAATACAAGGATTCTGTGGACGGTTCCATTTCATCACATCAAGGCATCCGATATTTGTTTGAAGATGGATCACGATTGATTTTCCGCCTTTCTGGAACTGGATCAGAAGGTGCAACTATTCGACTATACATTGAGCAGTATGAGAAGGATCCATCAAAGATTGGGAGACTTTCACAAGATGCACTTGCTCCTCTTGTGGAGGTTGCATTGAAACTTTCAAAGATGCAGGAATTCACTGGTCGATCTGCCCCAACAGTCATTACATGA 1749 0.426 MVLFNVSRKDTTPFDGQKPGTSGLRKKVKVFIQPNYLENFVQASFNALTAEKVRGATLVVSGDGRYYSKEAIQIITKMSAANGVRRVWIGQNGLLSTPAVSGVIRERVGPDGSKANGAFILTASHNPGGPNEDFGIKYNMENGGPAPEGITNKIYEYTTTIKEYFIAEDLPDVDITTTGVTNFTGPEGPFDVEVFDSASDYVKLMKSIFDFESLRKLLSSPKFTFCYDALHGVGGAYAKRIFVDELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLSKTESQGEPPEFGAAADGDADRNMILGKRFFVTPSDSVAIIAANAVEAIPYFSAGLKGVARSMPTSAALDVVAKSLNLKFFEVPTGWKFFGNLMDAGLCSVCGEESFGTGSDHIREKDGIWAVLAWLSILAYKNKDKIEDKLVTVEDIVRQHWATYGRHYYTRYDYENVDAAAAKELMAYLVKLQSSLSEVNQIIKGIRSDVSNVAHADEFEYKDSVDGSISSHQGIRYLFEDGSRLIFRLSGTGSEGATIRLYIEQYEKDPSKIGRLSQDALAPLVEVALKLSKMQEFTGRSAPTVIT 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1001 582 PANTHER BNAA09G30060D PROTEIN 115 582 - -
Lal16g1001 582 PANTHER BNAA09G30060D PROTEIN 3 115 - -
Lal16g1001 582 Gene3D - 205 313 - -
Lal16g1001 582 Gene3D - 421 582 - -
Lal16g1001 582 Gene3D - 314 412 - -
Lal16g1001 582 SUPERFAMILY Phosphoglucomutase, C-terminal domain 441 582 IPR036900 GO:0016868|GO:0071704
Lal16g1001 582 Pfam Phosphoglucomutase/phosphomannomutase, C-terminal domain 499 543 IPR005843 GO:0016868|GO:0071704
Lal16g1001 582 Gene3D - 6 204 - -
Lal16g1001 582 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 115 582 IPR045244 GO:0004614|GO:0005975
Lal16g1001 582 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 3 115 IPR045244 GO:0004614|GO:0005975
Lal16g1001 582 SUPERFAMILY Phosphoglucomutase, first 3 domains 199 314 IPR016055 GO:0005975|GO:0016868
Lal16g1001 582 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 17 164 IPR005844 GO:0005975|GO:0016868
Lal16g1001 582 CDD PGM1 11 582 - -
Lal16g1001 582 PRINTS Phosphoglucomutase/phosphomannomutase family signature 117 131 IPR005841 GO:0005975|GO:0016868
Lal16g1001 582 PRINTS Phosphoglucomutase/phosphomannomutase family signature 222 241 IPR005841 GO:0005975|GO:0016868
Lal16g1001 582 PRINTS Phosphoglucomutase/phosphomannomutase family signature 258 271 IPR005841 GO:0005975|GO:0016868
Lal16g1001 582 PRINTS Phosphoglucomutase/phosphomannomutase family signature 293 308 IPR005841 GO:0005975|GO:0016868
Lal16g1001 582 MobiDBLite consensus disorder prediction 1 21 - -
Lal16g1001 582 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 200 309 IPR005845 GO:0005975
Lal16g1001 582 ProSitePatterns Phosphoglucomutase and phosphomannomutase phosphoserine signature. 118 127 IPR016066 GO:0000287
Lal16g1001 582 SUPERFAMILY Phosphoglucomutase, first 3 domains 301 446 IPR016055 GO:0005975|GO:0016868
Lal16g1001 582 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 317 439 IPR005846 GO:0005975|GO:0016868
Lal16g1001 582 SUPERFAMILY Phosphoglucomutase, first 3 domains 4 229 IPR016055 GO:0005975|GO:0016868
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1001 Lal-Chr16 6642913 6649100 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1001 K01835 - gmx:100802789 1088.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1001 16 6642913 6649100 Lal16g1001 16 6642913 6649100 ECH
Lal16g1001 16 6642913 6649100 Lal23g0644 23 9158316 9164468 LSH