Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0942 ATGGCCTCAATGCTAACACCCCTTCTGACTCTCTTCCTCCTCTCCCTCATTCCAGTGCTCAAAGTTTCAGCAGCAGCAGTAATCTTCTACAACAAGTGCTCGCACCCAGTCTGGCCCGGGATCCAGCCCGGCGCAGGAAAGCCCATCCTGGCCCGAGGAGGCTTCAAGCTTGCCTCCAACAAAGCCCAATCCCTCCAACTCCCACCTCTCTGGTCAGGTCGCTTCTGGGGCCGCCACGGCTGCGCATTCGACACCACGGGCCGCGGCAAATGCGCCACCGGAGACTGCGGCGGCGCCCTCTTCTGCAACGGTATCGGCGGCACCCCACCCGCCACCCTAGCCGAATTCACCTTCGGCAACGACCAGGACTTCTATGACGTCAGCCTCGTCGACGGTTACAACCTCCCAATCTCCATTACCCCGGTCAAGGGCTCCGGCAAGTGTAGCTACGCGGGGTGCGTGAGTGATCTGAACTTGATGTGCCCGGTGGGCTTGCAGGTGAGGTCACGCGACATGAAGCGCGTGGTGGCGTGTAAGAGTGCTTGCTCTGCTTTTAATTCTCCTAGGTATTGTTGCACGGGTAGTTATGGAAGCCCACAGGCCTGTAAGCCCACAGCGTATTCCAGAATTTTCAAAAGTGCTTGCCCCAAAGCTTATTCCTATGCCTATGATGACCCCACTAGTATTGCCACTTGCACTAGGGCTAACTATTTGGTCACTTTTTGCCCTCATCACCCCTGA 741 0.5722 MASMLTPLLTLFLLSLIPVLKVSAAAVIFYNKCSHPVWPGIQPGAGKPILARGGFKLASNKAQSLQLPPLWSGRFWGRHGCAFDTTGRGKCATGDCGGALFCNGIGGTPPATLAEFTFGNDQDFYDVSLVDGYNLPISITPVKGSGKCSYAGCVSDLNLMCPVGLQVRSRDMKRVVACKSACSAFNSPRYCCTGSYGSPQACKPTAYSRIFKSACPKAYSYAYDDPTSIATCTRANYLVTFCPHHP 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0942 246 Pfam Thaumatin family 31 243 IPR001938 -
Lal16g0942 246 ProSiteProfiles Thaumatin family profile. 24 245 IPR001938 -
Lal16g0942 246 PANTHER OS03G0233200 PROTEIN 13 245 IPR001938 -
Lal16g0942 246 ProSitePatterns Thaumatin family signature. 87 102 IPR017949 -
Lal16g0942 246 CDD TLP-PA 29 242 - -
Lal16g0942 246 Gene3D Thaumatin 25 243 IPR037176 -
Lal16g0942 246 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Lal16g0942 246 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Lal16g0942 246 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Lal16g0942 246 PRINTS Pathogenesis-related protein signature 123 139 IPR001938 -
Lal16g0942 246 PRINTS Pathogenesis-related protein signature 233 242 IPR001938 -
Lal16g0942 246 SMART tha2 27 243 IPR001938 -
Lal16g0942 246 PANTHER THAUMATIN-LIKE PROTEIN 13 245 - -
Lal16g0942 246 SUPERFAMILY Osmotin, thaumatin-like protein 27 244 IPR037176 -
Lal16g0942 246 PIRSF PR5 1 246 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0942 Lal-Chr16 6261188 6262548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0942 9 244 Receptor kinase-like Gene Family AT5G38280 44.856 1.52e-63 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0942 - - gmx:100784636 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0942 16 6261188 6262548 Lal16g0942 16 6261188 6262548 ECH
Lal16g0942 16 6261188 6262548 Lal15g0915 15 7004119 7005609 LSH