LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal16g0883	ATGACAACAACCTTAGACGAGATAGCTTCTGCTAAAAGATGGCTTCCTCTTGAAGCTAACCCTGACGTCATGAATCAGTTCCTTTGGGGTCTTGGGCTTCCTCAAGATGAGGCAGAGTGCTATGATGTTTACGGCTTAGATGAAGAACTTTTGGAAATGGTTCCAAAGCCGGTTCTTGCCGTTCTTTTTCTTTATCCCATTACTACCAAGACTGAAGAAGAGAGGTTGCAACAGCAAAATGAAAATAAGGAACATAGCAGTAAAGTGTATTTTCTGAAGCAAACTGTGGGTAATGCCTGTGGTACAATAGGGCTTCTTCATGCTCTTGGTAACATAACTTCTGAGGTCAAGCTTGTTGAGGATTCATTCTTTGATAAGTTCTTTAAGTCTACTGCAAGCTTGGATCCATTTCAGCGTGCTGTATTTCTAGAGAACGACAGGGAGATGGAAGTTGCCCATTCAGCAGCAGCTACTGCTGGTGATACCGAGGCATCAGATAATGTGGATACTCATTTCATCTGCTTTACTTGTGTGGATGGTGAACTATATGAGCTTGATGGAAGAAAGTCAGCACCGATATCTCATGGTTCATCGTCACCAAGTACTTTGTTGAGGGATGCAGCTAAAGTCATTCAGAGCATGATCAAGAAAAATCCAGAGTCCCTTAACTTCAATGTCATGGCAATATCAAAGAAATCCAGTGATGGACAGTAG	714	0.4216	MTTTLDEIASAKRWLPLEANPDVMNQFLWGLGLPQDEAECYDVYGLDEELLEMVPKPVLAVLFLYPITTKTEEERLQQQNENKEHSSKVYFLKQTVGNACGTIGLLHALGNITSEVKLVEDSFFDKFFKSTASLDPFQRAVFLENDREMEVAHSAAATAGDTEASDNVDTHFICFTCVDGELYELDGRKSAPISHGSSSPSTLLRDAAKVIQSMIKKNPESLNFNVMAISKKSSDGQ	237

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal16g0883	237	PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	8	234	IPR001578	GO:0004843\|GO:0006511
	Lal16g0883	237	PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	8	234	-	-
	Lal16g0883	237	PRINTS	Ubiquitin C-terminal hydrolase (C12) family signature	16	33	IPR001578	GO:0004843\|GO:0006511
	Lal16g0883	237	PRINTS	Ubiquitin C-terminal hydrolase (C12) family signature	54	66	IPR001578	GO:0004843\|GO:0006511
	Lal16g0883	237	PRINTS	Ubiquitin C-terminal hydrolase (C12) family signature	94	111	IPR001578	GO:0004843\|GO:0006511
	Lal16g0883	237	PRINTS	Ubiquitin C-terminal hydrolase (C12) family signature	166	177	IPR001578	GO:0004843\|GO:0006511
	Lal16g0883	237	PRINTS	Ubiquitin C-terminal hydrolase (C12) family signature	182	192	IPR001578	GO:0004843\|GO:0006511
	Lal16g0883	237	SUPERFAMILY	Cysteine proteinases	12	231	IPR038765	-
	Lal16g0883	237	Gene3D	-	8	232	IPR036959	GO:0004843\|GO:0006511
	Lal16g0883	237	Pfam	Ubiquitin carboxyl-terminal hydrolase, family 1	14	215	IPR001578	GO:0004843\|GO:0006511
	Lal16g0883	237	CDD	Peptidase_C12_UCH_L1_L3	14	229	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal16g0883	Lal-Chr16	5806133	5813475	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal16g0883	K05609		-	gmx:100527718	410.609

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal16g0883	16	5806133	5813475	Lal15g0867	15	6508800	6514127	LSH