Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0868 ATGGCAAGCAACTTGTTTTTTGTTGTATTCCTAGTCCTATTGATGTTGTTTTCTTCAGTTACCCCAATAGAAATTAACCAAGACCTTGTTGCAGCCACTAAGGAGATGCAAAAGGCAAATTACTTCACATTTGTAATGCTCATCAACATGTCTCCACCTGATACAAAACTTGAAGGAAATGTGACTTTCTTGATGCCAAATGATAGAATGCTAGCTAACATGGTGTTACAAGAAGGTTCTATTTCTAGCTTCTTACTAAGGCATTCAGTCCCATCACCTTTGATCTTTGAGACCTTGGAACAATTCCCAACAGGGACAATTATTCCTAGCTCATTACCAAATTGCATGCTTAGAGTCTCAAACTATGGTAGGAAGAATTTTGTTCTCAACAATGTGAAAATCATTAGCAGGAATATATGTACAGCAGGATCTTCAATTAGATGCCATGGAATAGATGGTGTCTTGTCTGAAGATTGTGTATCAAATAATAATAACTCTAGTGTTCCTACACCAACCTGTTCTAATAGCACATCTCCTTCATGTATGGCCTCGCCTCCAATTCCATCTCCTACATTGCCTTCACCTCCTACTAGAGACAATCTTAGTCCTACATTTAGTGCCCCTAGTCCGAGTGATGCAAATGTTGGGACACAGAAATCAGGGTCTCCTTATGATGGGTCATTGAATTTGCATTACAATATGGATCAGTTATCAGCAATTAGTGAGGAACTCGCTGAAATCGATGGCCGCATCGCCGATAACTTCCGCGTCTTATCAAATGGATTTCAGAAGTTGGATAAGATTAAGGATTCAAGTAGACAAAGCAGACAGCTGGAAGAGCTTACTGACAAAATGCGTGACTCTAAACGGCTTATAAAAGAGTTCGATAAAGAAGTAAAAGCTTTGGAGGGCAACTTTGATAGAGAAACCAACAAAATGTTGACTGAGAAAAAGCAGTCAATGATCAAAGAGCTAAACTCATATGTTGCTTTGAAAAAGCAATATGCTACAAATATTGATAATAAGCGAATTGAGCTCTTTGAAGGGCCCAATGAAGGTTATACAGAAGAAAATGTCTTGCTAGCTTCATCAATGACAAATGAACAGCTAATGGATAGAGGGAATCACATGATGGATGAGACTGATCAAGCCATTGAGAGGGGAAAGAAGGTTGTTCAAGACACACTGAATGTTGGTACAGAGACTTCAGCAGCTCTCAAGGCTCAGACGGAACAAATGAGCAGAATTGTCAATGAGCTAGATTCTATCCATTTCTCTATGAAGAAAGCCTCTCAATTGGTCAAGGAAATCGGTAGGCAGGTTGCTACTGACAAGTGTATTATGGGTTTGCTCTTCCTTATTGTCGTTGGAGTAATCACTATCATTATTGTTAAGCTTGTGCACCCAAACAACAAGGACATTCGTGACATTCCAGGATTAGCTCCTCCGGTCATGAACCGAAGACTGCTTTCGCACCAGTTTAAGTATTAA 1491 0.3957 MASNLFFVVFLVLLMLFSSVTPIEINQDLVAATKEMQKANYFTFVMLINMSPPDTKLEGNVTFLMPNDRMLANMVLQEGSISSFLLRHSVPSPLIFETLEQFPTGTIIPSSLPNCMLRVSNYGRKNFVLNNVKIISRNICTAGSSIRCHGIDGVLSEDCVSNNNNSSVPTPTCSNSTSPSCMASPPIPSPTLPSPPTRDNLSPTFSAPSPSDANVGTQKSGSPYDGSLNLHYNMDQLSAISEELAEIDGRIADNFRVLSNGFQKLDKIKDSSRQSRQLEELTDKMRDSKRLIKEFDKEVKALEGNFDRETNKMLTEKKQSMIKELNSYVALKKQYATNIDNKRIELFEGPNEGYTEENVLLASSMTNEQLMDRGNHMMDETDQAIERGKKVVQDTLNVGTETSAALKAQTEQMSRIVNELDSIHFSMKKASQLVKEIGRQVATDKCIMGLLFLIVVGVITIIIVKLVHPNNKDIRDIPGLAPPVMNRRLLSHQFKY 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0868 496 Gene3D FAS1 domain 28 156 IPR036378 -
Lal16g0868 496 SUPERFAMILY SNARE fusion complex 365 438 - -
Lal16g0868 496 MobiDBLite consensus disorder prediction 165 226 - -
Lal16g0868 496 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 234 483 - -
Lal16g0868 496 Pfam Fasciclin domain 41 155 IPR000782 -
Lal16g0868 496 MobiDBLite consensus disorder prediction 165 182 - -
Lal16g0868 496 MobiDBLite consensus disorder prediction 183 197 - -
Lal16g0868 496 MobiDBLite consensus disorder prediction 198 226 - -
Lal16g0868 496 SUPERFAMILY FAS1 domain 58 155 IPR036378 -
Lal16g0868 496 SMART fasc_3 62 158 IPR000782 -
Lal16g0868 496 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 375 437 IPR000727 -
Lal16g0868 496 Coils Coil 278 312 - -
Lal16g0868 496 CDD SNARE_SNAP25N_23N_29N_SEC9N 372 436 IPR044766 GO:0005484|GO:0031201
Lal16g0868 496 Gene3D - 366 445 - -
Lal16g0868 496 SMART tSNARE_6 370 437 IPR000727 -
Lal16g0868 496 PANTHER NOVEL PLANT SNARE 11 234 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0868 Lal-Chr16 5695529 5702866 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0868 K08494 - gmx:100796579 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0868 16 5695529 5702866 Lal16g0868 16 5695529 5702866 ECH