Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0866 ATGGTGGATGCTTGGTGGGGTTTGGTGGAAAAAGATGGCCCTTTGAAGTACAACTGGAATGGCTATGTTGAGCTTGTGCAGATGGTACAAATGCATGGCTTGAAGCTTCAAGTTGTCATGTCTTTCCCCAAGTGTGGAGGAAATGTTGGAGACACCTGCAGCATTCCTCTACTTCCATGGGTGATGGAAGAAATAAATCAGAACCCTGACCTTGTTTATACAGACAGATCAGGGAGGAGGAATCCTGAGTACATCTCATTGGGCTGTGATTCAATGCCTGTTCTCAAAGGAAGGACTCCTCTCCAGGTTTATGCTGACTACATGAGGAGTTTCCATGACAGATTCAAAGATTACTTGGGCAGTGTCATCGTGGAAATACAAGTTGGGATGGGTCCTTGTGGTGAGCTGAGATATCCATCTTATCCAGAAACCAATGGAACTTGGAAGTTTCCTGGAATTGGAGAATTCCAATGCTATGACAAGTATATGATAGCATCATTGGCATCAGCAGCTGAAGCTGTGGGGAAGAGAGAATGGGGAAGAAGTGGCCCCCATGACTCAGGCCAGTATAATCAGTTTCCTGAGGAAACTGGATTTTTCAAAGGGGAAGGAACATGGAACTCTGAATATGGAAAGTTCTTTCTGAAATGGTACTCGAATAAATTGCTAGTACATGGTGAAAGCCTCCTTGCATCTTCCAAAGAGATATTCCACACATCTGGGGTGAAGCTATCTGGGAAAGTTGCTGGAATCCATTGGCATTACAGATCAAGGTCACATGCAGCAGAACTAACCGCCGGCTACTATAATACACGATCTAATGACGATAGCGAAAATGCTGGCAAGACAGGAGTTGTGATCAATTTCACCTGCATGGAAATGAAAGACAGAGAACAGCCTGATGATGCTAACTGCTCGCCCGAAGGGTTAGTTCACCAAGTAAAGACAGCAACCAGGATAGCTGGAGCAGAACTTGCTGGGGAAAATGCTTTGGAGAGATATGATAGAGATGCATATGCTCAAGTTTTGTTGACAAGTCACTCAGATTCTGGCAATGGATTGGCAGCATTTACATTTCTAAGACTGAATAAGAGGTTGTTTGATGCCAATAATTGGCGGCAACTAGTCGAGTTTGTAAGAAGCATGTCTGAAGGTGGCCGGAGACAAAGATTGTCAGACTCTGATTCCCAGGGGAGTGATCTTTATGTTGGGCACATCAAGGAAATTCAGTAG 1233 0.4444 MVDAWWGLVEKDGPLKYNWNGYVELVQMVQMHGLKLQVVMSFPKCGGNVGDTCSIPLLPWVMEEINQNPDLVYTDRSGRRNPEYISLGCDSMPVLKGRTPLQVYADYMRSFHDRFKDYLGSVIVEIQVGMGPCGELRYPSYPETNGTWKFPGIGEFQCYDKYMIASLASAAEAVGKREWGRSGPHDSGQYNQFPEETGFFKGEGTWNSEYGKFFLKWYSNKLLVHGESLLASSKEIFHTSGVKLSGKVAGIHWHYRSRSHAAELTAGYYNTRSNDDSENAGKTGVVINFTCMEMKDREQPDDANCSPEGLVHQVKTATRIAGAELAGENALERYDRDAYAQVLLTSHSDSGNGLAAFTFLRLNKRLFDANNWRQLVEFVRSMSEGGRRQRLSDSDSQGSDLYVGHIKEIQ 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0866 410 Pfam Glycosyl hydrolase family 14 1 378 IPR001554 GO:0000272|GO:0016161
Lal16g0866 410 Gene3D Glycosidases 1 407 - -
Lal16g0866 410 PANTHER - 1 406 IPR001554 GO:0000272|GO:0016161
Lal16g0866 410 SUPERFAMILY (Trans)glycosidases 1 385 IPR017853 -
Lal16g0866 410 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 17 35 IPR001554 GO:0000272|GO:0016161
Lal16g0866 410 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 39 60 IPR001554 GO:0000272|GO:0016161
Lal16g0866 410 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 131 153 IPR001554 GO:0000272|GO:0016161
Lal16g0866 410 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 206 225 IPR001554 GO:0000272|GO:0016161
Lal16g0866 410 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 242 258 IPR001554 GO:0000272|GO:0016161
Lal16g0866 410 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 259 270 IPR001554 GO:0000272|GO:0016161
Lal16g0866 410 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 273 296 IPR001554 GO:0000272|GO:0016161
Lal16g0866 410 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 310 332 IPR001554 GO:0000272|GO:0016161
Lal16g0866 410 PANTHER BETA-AMYLASE 3, CHLOROPLASTIC 1 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0866 Lal-Chr16 5685773 5688226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0866 1 407 Glycoside Hydrolase AT4G17090 72.993 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0866 K01177 - gmx:547683 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0866 16 5685773 5688226 Lal16g0866 16 5685773 5688226 ECH