Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0860 ATGGCGCCAGTATCAGCACTTGCAAAGTACAAGTTAGTGTTCTTAGGTGATCAATCCGTTGGTAAAACCAGCATCATCACTCGCTTCATGTATGATAAATTCGATAACACTTATCAGGCTACAATTGGTATTGATTTTCTATCAAAAACCATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTATGGGATACAGCTGGACAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGGGACTCATCTGTTGCTGTCGTTGTTTATGATGTTGCAAGTCGTCAGACTTTCCTAAATACATTAAAGTGGATTGAAGAGGTGCGCAGTGAGAGAGGCAGCGATGTCATTGTTGTTCTCGTCGGGAACAAAACTGACCTTGTGGATAAGAGGCAAGTCTCTACAGAGGAAGGAGAAACAACGGCCCGTGAGCTAGACGTTATGTTTATTGAAGCTAGTGCCAAAGCTGGCTTTAATATAAAGGCCCTCTTTCGGAAAATTGCTGCTGCATTACCTGGAATGGAAACACTCTCTTCCACCAAAAAAGAAGAAATGGTTGATGTAAACCTGTCTTCTGGCCGTCATTCTCAACAATCTGGTGGATGTGCTTGCTGA 612 0.4216 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQTFLNTLKWIEEVRSERGSDVIVVLVGNKTDLVDKRQVSTEEGETTARELDVMFIEASAKAGFNIKALFRKIAAALPGMETLSSTKKEEMVDVNLSSGRHSQQSGGCAC 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0860 203 SMART rab_sub_5 10 173 - -
Lal16g0860 203 TIGRFAM small_GTP: small GTP-binding protein domain 9 166 IPR005225 GO:0005525
Lal16g0860 203 CDD Rab6 10 170 - -
Lal16g0860 203 PANTHER DRAB5-RELATED 1 203 - -
Lal16g0860 203 SMART ran_sub_2 15 201 - -
Lal16g0860 203 Pfam Ras family 11 169 IPR001806 GO:0003924|GO:0005525
Lal16g0860 203 ProSiteProfiles small GTPase Rho family profile. 3 176 - -
Lal16g0860 203 SMART rho_sub_3 12 172 IPR001806 GO:0003924|GO:0005525
Lal16g0860 203 ProSiteProfiles small GTPase Ras family profile. 5 203 IPR001806 GO:0003924|GO:0005525
Lal16g0860 203 SMART ras_sub_4 7 173 - -
Lal16g0860 203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 181 IPR027417 -
Lal16g0860 203 PRINTS Transforming protein P21 ras signature 10 31 - -
Lal16g0860 203 PRINTS Transforming protein P21 ras signature 33 49 - -
Lal16g0860 203 PRINTS Transforming protein P21 ras signature 51 73 - -
Lal16g0860 203 PRINTS Transforming protein P21 ras signature 113 126 - -
Lal16g0860 203 PRINTS Transforming protein P21 ras signature 148 170 - -
Lal16g0860 203 PANTHER GTP-BINDING PROTEIN RAB6 1 203 - -
Lal16g0860 203 Gene3D - 6 199 IPR027417 -
Lal16g0860 203 ProSiteProfiles small GTPase Rab1 family profile. 5 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0860 Lal-Chr16 5620959 5625132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0860 10 197 EF-hand Containing Proteins AT3G63150 23.711 1.37e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0860 K07893 - gmx:100527651 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0860 16 5620959 5625132 Lal16g0860 16 5620959 5625132 ECH
Lal16g0860 16 5620959 5625132 Lal23g1260 23 13715604 13719510 LSH