Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0852 ATGGCTGCTCCTCTATCCAGCACAATATCAATCGACCCAAGCAACAGAACAAGGTTTACCATTGTCACCCCTCTCACTTTCACACACAGAAAATTTTCCATACACTGCACCACTTCTGAATCCATTCCACAAACTCCTCCTCCTACTTCAAACACCAAGAATAAGAACAACAACAACAAAAATTCTTCTCTGTTCGACCAACTCTCACCTCTTGCAAACACCACCTTGTCTAACACAACATCAAAAGATCAATCATATGTCTTGTCCAAACCAAAATCAACATGGGTTAACCCCACCAAACCAAAACGTTCTGTCCTCTCACAGCAAAGGCACAAACGTGTTCCTTACTCCTATAGTCCTCAACTCAGAGATTTCAAACTCTTTGCACAAAAGCTCAATGATTGTGGTGACTCTGAAGCTGAGTTTTTGGCTTGTCTTGGAGAAATCCCACATGAACTTACAAGAGAAAATGCACTCTTGATACTCAATAGTTTGAAGACATGGCAAAAAACACAACTTTTTTTCAATTGGATAAAGACCCAGAATTCGCTTCCTATGGAAACCATATTCTACAATGTCACAATGAAGTCTTTGAGGTTTGGGAGACAGTTTGGGAGGATTGAAGAACTTGCACACCAGATGATTGATGACGGGACTCAACCAGATAACGTTACTTACTCAACAATCATAACTTGTGCCAAGAAGTGTAATCTTTTTGACAAGGCTGTGCACTGGTTTGAGAGGATGTACAAGACTGGTTTAATGCCAGATGAGGTCACTTACTCAGCTATCTTGGATGTTTATGCTAAGTTAGGTAAAGTTGAAGAGGTGATAAATTTGTATGAGAAAGCTAGAGCAACTGGGTGGAAACCTGACAATATCACATTCTCTGTGTTGGGGAAGATGTTTGGGGAGGCTGGGGACTATGATGGTATTAGGTATGTATTGCAAGAGATGAAGTCTATCGGGGTGCAGGCTAATTTAGTTGTGTATAATACCTTGTTGGAGGCAATGGGGAAAGCTGGGAAGCCAGGGTTTGCAAGGAGTTTGTTTGATGAAATGATTGATTCAGGGATAACCCCAGATGAGAAGACTTTAACGGCACTTATTAAGATATATGGTAAGGCCCGGTGGTCTCGTGATGCACTGGAATTGTGGGATCGAATGAAGGAAAATCGCTGGCCTATGGATTTTTTTCTGTATAATACATTGTTGAATATGTGCGCAGATGTTGGGTTGGTGGAGGAGGCTGAAACTTTGTTCAGGGACATGAAACAATCTGAGCATCGCAAACCAGACAGCTGGAGTTACACAGCAATGCTTAACATATATGGAAGTGGAGGAAATGTAGACAAGGCGATGGAATTGTTTGAAGAGATGTCTAAGTCTGGGATTGAACTCAACATCATGGGGTGTACTTGTTTGATTCAATGCTTGGGAAAAGCTATGGAGTTTGATGACTTGGTAAGAGTTTTTAACGTTGCAGTTGAGAGAGGAGTTAAGCTAGATGATAGGCTATGTGGTTGCTTGCTATCTGTTGTGTCTTTGTCTCATGGCAGCAAGCATGAGGAAAACATTCTTGCTTGTTTGCAGCAGGCTAACCCAAAATTGGTTGCTTTTATTCAACTGATTGTGGATGAGAAAACTAGTTTTGAGACCATCAAAGAAGAGTTCAAGAATATCATGAGCAATGCTGCAGTTGAAGTTAGAAGACCCTTCTGTAATTGCTTAATTGACATATGCAGAAACAAAGAACTCCAAGAGAGAGCCCACGAGCTTCTGTACTTGGGAACCTTGTATGGGTTGTACCCAAGTTTGCACAACAAAACTGCCAATGAATGGCGTTTAGACGTTCGATCATTGTCAGTTGGTGCAGCTGAAACTGCATTGGAAGAGTGGATGTGGACACTCACCAAGATTGTTCGGCGGGAGGGGACATTGCCAGAGTTATTCCTAGCCCAGACTGGCAGCGGTACTCATAAGTTTGCCCAAGGACTGAACATTTCTTTTGCCTCTTATTTGAGGAAACTAGATGCTCCATTTAGGCAGAGTGAGGACAAAGTTGGTAGTTTTATTGCAACTAGAAAGGATTTAGTCTCTTGGGTGCAATCAAAGTTTCCATCAGGTGCTATTGCAACATAG 2142 0.4183 MAAPLSSTISIDPSNRTRFTIVTPLTFTHRKFSIHCTTSESIPQTPPPTSNTKNKNNNNKNSSLFDQLSPLANTTLSNTTSKDQSYVLSKPKSTWVNPTKPKRSVLSQQRHKRVPYSYSPQLRDFKLFAQKLNDCGDSEAEFLACLGEIPHELTRENALLILNSLKTWQKTQLFFNWIKTQNSLPMETIFYNVTMKSLRFGRQFGRIEELAHQMIDDGTQPDNVTYSTIITCAKKCNLFDKAVHWFERMYKTGLMPDEVTYSAILDVYAKLGKVEEVINLYEKARATGWKPDNITFSVLGKMFGEAGDYDGIRYVLQEMKSIGVQANLVVYNTLLEAMGKAGKPGFARSLFDEMIDSGITPDEKTLTALIKIYGKARWSRDALELWDRMKENRWPMDFFLYNTLLNMCADVGLVEEAETLFRDMKQSEHRKPDSWSYTAMLNIYGSGGNVDKAMELFEEMSKSGIELNIMGCTCLIQCLGKAMEFDDLVRVFNVAVERGVKLDDRLCGCLLSVVSLSHGSKHEENILACLQQANPKLVAFIQLIVDEKTSFETIKEEFKNIMSNAAVEVRRPFCNCLIDICRNKELQERAHELLYLGTLYGLYPSLHNKTANEWRLDVRSLSVGAAETALEEWMWTLTKIVRREGTLPELFLAQTGSGTHKFAQGLNISFASYLRKLDAPFRQSEDKVGSFIATRKDLVSWVQSKFPSGAIAT 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0852 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Lal16g0852 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Lal16g0852 713 ProSiteProfiles Smr domain profile. 616 699 IPR002625 -
Lal16g0852 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Lal16g0852 713 SMART SMR_2 613 696 IPR002625 -
Lal16g0852 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Lal16g0852 713 PANTHER OS03G0856100 PROTEIN 27 706 - -
Lal16g0852 713 TIGRFAM PPR: pentatricopeptide repeat domain 259 292 IPR002885 -
Lal16g0852 713 TIGRFAM PPR: pentatricopeptide repeat domain 400 433 IPR002885 -
Lal16g0852 713 TIGRFAM PPR: pentatricopeptide repeat domain 224 258 IPR002885 -
Lal16g0852 713 TIGRFAM PPR: pentatricopeptide repeat domain 365 397 IPR002885 -
Lal16g0852 713 TIGRFAM PPR: pentatricopeptide repeat domain 436 468 IPR002885 -
Lal16g0852 713 TIGRFAM PPR: pentatricopeptide repeat domain 472 503 IPR002885 -
Lal16g0852 713 TIGRFAM PPR: pentatricopeptide repeat domain 329 363 IPR002885 -
Lal16g0852 713 Pfam PPR repeat family 399 442 IPR002885 -
Lal16g0852 713 Pfam PPR repeat family 327 371 IPR002885 -
Lal16g0852 713 MobiDBLite consensus disorder prediction 90 110 - -
Lal16g0852 713 Pfam PPR repeat 294 324 IPR002885 -
Lal16g0852 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Lal16g0852 713 SUPERFAMILY HCP-like 239 465 - -
Lal16g0852 713 MobiDBLite consensus disorder prediction 38 66 - -
Lal16g0852 713 Gene3D Tetratricopeptide repeat domain 429 498 IPR011990 GO:0005515
Lal16g0852 713 Gene3D Tetratricopeptide repeat domain 130 283 IPR011990 GO:0005515
Lal16g0852 713 Pfam Pentatricopeptide repeat domain 456 495 IPR002885 -
Lal16g0852 713 Pfam Pentatricopeptide repeat domain 210 269 IPR002885 -
Lal16g0852 713 PANTHER OS03G0856100 PROTEIN 27 706 - -
Lal16g0852 713 Gene3D Tetratricopeptide repeat domain 284 428 IPR011990 GO:0005515
Lal16g0852 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 467 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0852 Lal-Chr16 5530590 5532731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0852 212 506 Glycosyltransferase AT1G05670 24.746 4.01e-22 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0852 - - gmx:100780994 1114.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0852 16 5530590 5532731 Lal16g0852 16 5530590 5532731 ECH