Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0838 ATGAGTAACCAGAAGAAGAGGAATTTTCAGATTGAGGCGTTTAAGCACCGTGTGGTGATGGATCCGAAATATGCAGACAAGACATGGAAGATTCTAGAACATGCCATTCACGAGATTTACAACCACAACGCTAGTGGTCTCAGCTTTGAAGAGCTTTACAGAAATGCATACAATATGGTGCTTCACAAATTTGGTGAGAAGCTGTACTCTGGATTGGTTGCAACGATGACTGGACATCTCAAAGATATAGCTAAATCTGTTGAAGCCGCTCATGGAGGTTCTTTTCTGGAAGAGCTGAACAGGAAATGGAATGACCATAATAAGGCATTACAAATGATTCGAGACATACTGATGTACATGGATAGGACTTACATTCCAAGCACCCAGAAGACCCCTGTACATGAACTCGGGCTGAATCTGTGGAGAGAGAATGTGGTTTATTCCAGCCAGATCAGGACCCGGCTATTGAATACTCTTCTGGAATTGGTACAAAGTGAACGCAGTGGTGAAGTTGTTGATAGAGGGATAATGAGAAATATAACAAAGATGCTAATGGATTTAGGTCCTTCTGTTTATGGGCAAGAATTTGAGAATAATTTTCTTCATGTTTCAGCTGAGTTCTACCGGGTAGAATCCCAAAAATTCATTGAGTGTTGTGATTGTGGTGATTATCTGAAAAAAGCTGAGAGGCGTCTGAATGAAGAAATGGATAGAGTGAGCCATTACTTGGATCCCAGGACTGAAACGAAGATTACTAATGTGGTGGAGAAGGAGATGATTGAAAATCACATGCTTAGATTAATCCATATGGAGAACTCTGGGTTAGTACACATGCTTTGCGATGATAAATATGAAGATTTGGGTAGAATATATAATTTGTTCCGTCGTGTTACTGATGGTCTCTTAAAAATACGAGAAGTGATGACTTCGCACATCAGAGAGTCTGGTAAACAGCTTGTTACTGATCCTGAAAGGTTGAAAGATCCTGTTGAATTTGTGCAGAGGCTCTTGGATAAGAAAGATAAATATGACAAGATTATAAACATGTCATTTAACAATGACAAGTCTTTCCAGAATGCTTTGAATTCCTCATTTGAATATTTCATTAACTTGAATCCTCGTTCTCCAGAGTTCATTTCACTGTTTATAGACGATAAACTTCGGAAAGGTCTGAAAGGGGTTAGTGAGGATGATGTAGAACTTACACTTGACAAGGTGATGATGCTATTTCGATACCTGCAAGAAAAAGATGTTTTTGAGAAGTATTACAAACAGCATCTGGCAAAGAGGCTTTTGTCTGGTAAAACTGTTTCTGATGATGCAGAGAGAAGTCTCATAGTCAAGCTGAAGACAGAATGTGGTTACCAATTTACATCAAAAATGGAGGGAATGTTTACGGACATGAAAACCTCTCAGGATACTATGCAGGGATTTTATGCCGGCCACCCTGAACTAGGCGATGGTCCTACACTTACTGTCCAAGTTCTGACAACAGGTTCTTGGCCAACTCAGTCTAGTGTTACATGCAATCTACCAGCTGAAATGTCTGCACTTTGTGAGAAGTTCCGGTCATATTATCTCGGCACCCATACTGGTAGGAGATTGTCCTGGCAAACTAATATGGGCACGGCTGACTTAAAAGCAACCTTTGGGAAGGGTCAGAAGCATGAGTTAAATGTTTCCACTTACCAGATGTGTGTTCTCATGCTGTTTAATAATGCTGATAGACTTAGCTACAAAGAGATTGAGCAAGCAACTGAGATTCCTGCCCCAGATCTTAAGAGATGCCTGCAATCATTGGCTTTAGTTAAAGGAAGAAATGTCCTAAGAAAGGAGCCTATGAGCAAAGATGTTGGTGAGGATGATGCGTTCTTTGTTAATGACAAGTTCAGCAGTAAACTGTACAAGGTAAAAATTGGTACTGTAGTTGCACAAAAGGAATCAGAACCAGAGAAACAAGAAACTCGACAGAAAGTAGAGGAGGACAGGAAGCCCCAAATTGAAGCAGCAATAGTCAGGGTTATGAAATCCAGGAAGCAGCTCGATCATAACAATCTTATAGCTGAGGTCACCAAGCAGTTGCAATCACGTTTCTTGGCCAATCCAACCGAGGTAAAGAAACGGATAGAATCTCTTATCGAACGTGACTTTTTGGAGAGAGATGATAGTGACAGAAAACTGTATCGATATCTTGCCTAG 2199 0.4047 MSNQKKRNFQIEAFKHRVVMDPKYADKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVATMTGHLKDIAKSVEAAHGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTQKTPVHELGLNLWRENVVYSSQIRTRLLNTLLELVQSERSGEVVDRGIMRNITKMLMDLGPSVYGQEFENNFLHVSAEFYRVESQKFIECCDCGDYLKKAERRLNEEMDRVSHYLDPRTETKITNVVEKEMIENHMLRLIHMENSGLVHMLCDDKYEDLGRIYNLFRRVTDGLLKIREVMTSHIRESGKQLVTDPERLKDPVEFVQRLLDKKDKYDKIINMSFNNDKSFQNALNSSFEYFINLNPRSPEFISLFIDDKLRKGLKGVSEDDVELTLDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKMEGMFTDMKTSQDTMQGFYAGHPELGDGPTLTVQVLTTGSWPTQSSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGTADLKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYKEIEQATEIPAPDLKRCLQSLALVKGRNVLRKEPMSKDVGEDDAFFVNDKFSSKLYKVKIGTVVAQKESEPEKQETRQKVEEDRKPQIEAAIVRVMKSRKQLDHNNLIAEVTKQLQSRFLANPTEVKKRIESLIERDFLERDDSDRKLYRYLA 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0838 732 Pfam Cullin family 29 630 IPR001373 GO:0006511|GO:0031625
Lal16g0838 732 SUPERFAMILY Cullin repeat-like 22 372 IPR016159 -
Lal16g0838 732 SUPERFAMILY Cullin homology domain 368 640 IPR036317 -
Lal16g0838 732 Pfam Cullin protein neddylation domain 662 724 IPR019559 -
Lal16g0838 732 Gene3D Cullin Repeats 145 264 - -
Lal16g0838 732 ProSiteProfiles Cullin family profile. 374 601 IPR016158 -
Lal16g0838 732 Gene3D - 644 732 IPR036388 -
Lal16g0838 732 Gene3D Cullin Repeats 265 372 - -
Lal16g0838 732 Gene3D Cullin Repeats 14 143 - -
Lal16g0838 732 SUPERFAMILY "Winged helix" DNA-binding domain 643 732 IPR036390 -
Lal16g0838 732 Gene3D Cullin Repeats 373 483 - -
Lal16g0838 732 PANTHER CULLIN-3A-RELATED 3 732 - -
Lal16g0838 732 PANTHER CULLIN 3 732 IPR045093 -
Lal16g0838 732 SMART Cullin_Nedd8_2 659 726 IPR019559 -
Lal16g0838 732 Gene3D Cullin; Chain C, Domain 2 489 643 - -
Lal16g0838 732 SMART cul_2 404 550 IPR016158 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0838 Lal-Chr16 5422775 5425935 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0838 K03869 - gmx:100795098 1394.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0838 16 5422775 5425935 Lal16g0838 16 5422775 5425935 ECH