Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0829 ATGGAGCAAATTCCTATGAACATAAACATTTCTTGGCTATCTTTGTGTCTTAGTAGAATTGTCCTATGGGATATTAGAAAAAATAGCTTCCTGTCATTTTTCTTGTTTTGCTTCCATTCTTTGTGGAATTCTATCTCCCATAATTGGAAAACTTGCACCAAATCATTAAGTTACTCGAATCCTGAAACAGTGAAGAAGAGTTTGAACTGCATTCAACATGGTGTAAGACTATGTAAAGAAGATGTGATTGTGATTATGGAAAAGCTAGGAATCAATGTTGATGAGGATGGAGATGGAATAGAAGAGTTTGGTGAAGAAGTTGATGAATTAATGCTTGAGAAGGAGCCAAGCTTAGAAGAGGTAGAGGAAGCTTTCAATGTGTTTGATGAAAATAAAGATGGGTTCATAGAGGCTAAGGAGTTACAAAGAGTGTTAAGAATTTTAGGTTTGGAAAATAATTTGATGCAGTGTCAGAGAATGATTAATGTTGTTGATCAAAATGGAGATGAACTAATTGATCAAAATGAGTTTGTGAAGCTTATAGAACAGAGTTTTGGGTGA 561 0.344 MEQIPMNINISWLSLCLSRIVLWDIRKNSFLSFFLFCFHSLWNSISHNWKTCTKSLSYSNPETVKKSLNCIQHGVRLCKEDVIVIMEKLGINVDEDGDGIEEFGEEVDELMLEKEPSLEEVEEAFNVFDENKDGFIEAKELQRVLRILGLENNLMQCQRMINVVDQNGDELIDQNEFVKLIEQSFG 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0829 186 Gene3D - 49 186 - -
Lal16g0829 186 SUPERFAMILY EF-hand 93 181 IPR011992 -
Lal16g0829 186 ProSiteProfiles EF-hand calcium-binding domain profile. 116 151 IPR002048 GO:0005509
Lal16g0829 186 Pfam EF-hand domain pair 119 181 IPR002048 GO:0005509
Lal16g0829 186 ProSiteProfiles EF-hand calcium-binding domain profile. 152 186 IPR002048 GO:0005509
Lal16g0829 186 CDD EFh 120 181 IPR002048 GO:0005509
Lal16g0829 186 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 26 185 - -
Lal16g0829 186 SMART efh_1 120 148 IPR002048 GO:0005509
Lal16g0829 186 SMART efh_1 156 184 IPR002048 GO:0005509
Lal16g0829 186 ProSitePatterns EF-hand calcium-binding domain. 129 141 IPR018247 -
Lal16g0829 186 PANTHER CALCIUM-BINDING PROTEIN CML46-RELATED 26 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0829 Lal-Chr16 5354416 5354976 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0829 77 185 EF-hand Containing Proteins AT5G39670 50.442 4.01e-29 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0829 K02183 - gmx:100526868 196.052
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0829 16 5354416 5354976 Lal16g0829 16 5354416 5354976 ECH