Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0586 ATGTGTTACTATCTGCTACATATAGTTACACTAGTAACAGTGATAGCATTTGGAGGAGAAATTAGGAAAACTACAGAAGCTTGCAATTCAGATGACTTAGAAGGTTTGATAGGATTCAAGAATGGAATTCAGACTGACACGTCTGGTCGGCTGGCAAAGTGGATTGGTCAGAACTGTTGTGAATGGGAAGGCATTGTCTGTGAAAATGCTTATAGGGTGACACAGATCAATCTCCCAGGGTTAATTTCCACAGATAAAGATTTATTTCAAACCCAAATGATTGGCCAACTTTCTCCATCCATAACACTCCTCACCTCACTTGAAATCCTTGATCTTGGTGGCTTAGTAGGTCTCAGTGGAACAATTCCACAAACACTTGGTTTGCAACTCACAAAACTCCAAAAGCTCTACCTTTATGGCAACAATTTAACTGGCTCAATACCAGAAAGCATTGGTGAGTTACAAAACCTCCAGGAACTGGCACTGCATGAAAATAAGCTATATGGGCCAATACCTTCTACCATTGGTCAGATGCAGGCTCTGGAAAAGCTTGATCTTTCAAGCAATTTGTTAAGTGGGAGCATACCTTCTTCACTAACCAACTTAACTGCCATTTCAGTTTTGTATATGAACACCAACTATCTTGAGGGAACTATCCCATTTCCCTCAAGATATGGCGAAATGCCTTCTTTGGCCTTCTTGAGACTGCATGATAACTATCTTAGTGGAACTGTACCTCTCAATTTTGGTTACCTTGTTTCTCTTCAAAGAGTCTCATTATCAAACAACAAACTTGAAGGACCATTGCCTTCAAGTTTGAGCAATTTGCTATCTTTGTCAGAGCTTTACCTTAGCTTCAACTTCTTATCAGGCCAAATACCAAAATCAACAGGCCAACTTTCTCAGCTCATAATGTTGAACATTTCCAATAATTTGATTGAAGGGCCATTGCCTCAAGAGATGTCTTTCCTTCAAAATCTCCAAACCCTTGATCTCTCTTTCAACCCTCTCAACCTTACCGCTATCCCAGAATGGCTACCAAACCTGTCATCACTTTCCATGATTTACTTTGCAGGTTGTGGAATCCAAGGCCGAATTCCGGATTTTTTAAAAAGAATTGACGGTTCAATACAGGAACTTGACTTATCAGGGAACCTTCTCAGTGGAAGCATACCATCATGGATAGGATCCTTCACTCAGCTCTACTTGTTAAACCTCTCAACATTTGGCATCGGACAAGGTAACTTCGGGGGATCACTAACATACATTGATCTTTCTGATAACAACTTCTCAAGTGGAGTTGAGGAAATTGGTGTAGGAGGGCAGTTTAACATTCAGCTTCTGAATTTATCTCATAATCTTCTGAAGGGTACATTGCCAAGTTCCCTTGTGAGACTGAGTTCTATTCATACTTTGGATTTGAGTTACAATGACTTAGCCTCCAACTTGCCAGAGGTGCTGGCAAATTTGAGTTCATTGGAGAAACTGAAGCTGCAAAAAAATCATTTCATTGGTAATATACCCAATGGATTTCTCAACTTGAGAAACCTGAAGGAGTTAAATTTGTCATACAATTTTCTGGAAGGGGAAATTCCAGATGGTAAACCTCTTATTGACTTTCCTGGGAGCTCTTATTCTGGAAATAAAGGTTTGTGTGGGAAGCCTCTTAGTCCTTGTAAAACCATGAATTCGATTAAACTGTAG 1704 0.3991 MCYYLLHIVTLVTVIAFGGEIRKTTEACNSDDLEGLIGFKNGIQTDTSGRLAKWIGQNCCEWEGIVCENAYRVTQINLPGLISTDKDLFQTQMIGQLSPSITLLTSLEILDLGGLVGLSGTIPQTLGLQLTKLQKLYLYGNNLTGSIPESIGELQNLQELALHENKLYGPIPSTIGQMQALEKLDLSSNLLSGSIPSSLTNLTAISVLYMNTNYLEGTIPFPSRYGEMPSLAFLRLHDNYLSGTVPLNFGYLVSLQRVSLSNNKLEGPLPSSLSNLLSLSELYLSFNFLSGQIPKSTGQLSQLIMLNISNNLIEGPLPQEMSFLQNLQTLDLSFNPLNLTAIPEWLPNLSSLSMIYFAGCGIQGRIPDFLKRIDGSIQELDLSGNLLSGSIPSWIGSFTQLYLLNLSTFGIGQGNFGGSLTYIDLSDNNFSSGVEEIGVGGQFNIQLLNLSHNLLKGTLPSSLVRLSSIHTLDLSYNDLASNLPEVLANLSSLEKLKLQKNHFIGNIPNGFLNLRNLKELNLSYNFLEGEIPDGKPLIDFPGSSYSGNKGLCGKPLSPCKTMNSIKL 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0586 567 SUPERFAMILY RNI-like 135 532 - -
Lal16g0586 567 SMART LRR_sd22_2 324 341 - -
Lal16g0586 567 SMART LRR_sd22_2 466 492 - -
Lal16g0586 567 SMART LRR_sd22_2 178 204 - -
Lal16g0586 567 SMART LRR_sd22_2 130 156 - -
Lal16g0586 567 SMART LRR_sd22_2 252 278 - -
Lal16g0586 567 PRINTS Leucine-rich repeat signature 181 194 - -
Lal16g0586 567 PRINTS Leucine-rich repeat signature 324 337 - -
Lal16g0586 567 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 167 408 - -
Lal16g0586 567 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 5 178 - -
Lal16g0586 567 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 408 560 - -
Lal16g0586 567 SMART LRR_typ_2 252 275 IPR003591 -
Lal16g0586 567 SMART LRR_typ_2 490 513 IPR003591 -
Lal16g0586 567 SMART LRR_typ_2 178 202 IPR003591 -
Lal16g0586 567 SMART LRR_typ_2 276 300 IPR003591 -
Lal16g0586 567 SMART LRR_typ_2 466 489 IPR003591 -
Lal16g0586 567 SMART LRR_typ_2 324 349 IPR003591 -
Lal16g0586 567 SMART LRR_typ_2 514 536 IPR003591 -
Lal16g0586 567 SMART LRR_typ_2 130 154 IPR003591 -
Lal16g0586 567 Gene3D Ribonuclease Inhibitor 27 222 IPR032675 -
Lal16g0586 567 Pfam Leucine Rich Repeat 132 154 IPR001611 GO:0005515
Lal16g0586 567 Pfam Leucine Rich Repeat 516 533 IPR001611 GO:0005515
Lal16g0586 567 Pfam Leucine rich repeat 156 215 IPR001611 GO:0005515
Lal16g0586 567 Pfam Leucine rich repeat 278 337 IPR001611 GO:0005515
Lal16g0586 567 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Lal16g0586 567 Gene3D Ribonuclease Inhibitor 223 563 IPR032675 -
Lal16g0586 567 ProSiteProfiles Leucine-rich repeat profile. 516 538 IPR001611 GO:0005515
Lal16g0586 567 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 5 178 - -
Lal16g0586 567 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 408 560 - -
Lal16g0586 567 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 167 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0586 Lal-Chr16 3803135 3805465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0586 5 532 Receptor kinase-like Gene Family AT4G08850 33.394 3.41e-66 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0586 - - gmx:100799647 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0586 16 3803135 3805465 Lal16g0586 16 3803135 3805465 ECH