Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0575 ATGACCACTCAAGTTATCCTTTCCCACACAGTACCACCTCGTTTCCCTTCTTCTTCTTCTTCTTCTTCAAAACCCACCACTCTCTCTTTTTTCTCTTTCTCTCTTCTTCGCAACCATTCTCTTCTTTTCCCACTCTCTTTCTCTTTCAACTCCCCTACCTCTTCTTTCCCTACTATCCAACATCACAACGATGACGACGACGACGACGAAGATGTTGCAGCCGACGACTACGAAGAAGAAGAAGAAGAAGAAGAATTTGAAGGAGAAGACGAAGATGATGGTGATGACGTTGCAGCTGACGATTACGACGACGGCGAAGCCACTGACGCCGACGATGGCGATGCGTTCGATGTTCCTCTGAGCGATGGAGCTTTTAAGTGGCAGAGAGTTGAGAAGCTCTGTAATGAAGTTAGAGAGTTCGGCGCTAACATTATTGATGCTGATGAACTCGCTTCCGTTTATGATTTTCGGATTGACAAGTTTCAGAGGCTGGCGATTCAAGCTTTTTTGAGGGGTTCATCGGTGGTGGTTTCTGCTCCTACCAGCAGCGGGAAGACTCTGATTGCGGAGGCTGCTGCAGTGGCCACAGTGGCGAGGGGGAGAAGGATATTCTACACAACTCCGCTCAAAGCACTCTCCAATCAGAAGTTTCGTGAATTCCGGGAGACTTTTGGTGACACCAATGTCGGCCTTCTTACCGGTGATTCTGCCATCAACAAGGAGGCTCAGGTTTTGATTATGACTACAGAGATATTACGCAACATGTTGTATCAAAGCAATTCCATAAAAAAGCAGCCAATGCGTGAGGCTCCCCACCTAGTGGGGTCTGTGGAGGCCGTTTCCGGGATTCGAACCCATGACCTCTTGGTCACTAGCAGCGACCTTACGATAGTAGCAATTCGAGATAGAGATGGAGAATGTGCACAATTTGGCGTAGCAGAAGAAGCTAATAGTGGAGAAGAAGCATTCACAGCAGGAACATCGGCGGCATTGGCCATAGTAGTGAATGATAGCATTGTTGGTAATGTTTCTTCTGGAGGTGGACTTTTTCATGTTGATGTGATTGTTTTGGATGAAGTTCATTACCTTAGTGACATATCTCGTGGTACAGTGTGGGAAGAGATTGTTATTTATTGTCCTAAAGAAGTTCAACTTATTTGTCTGTCAGCAACCGTTGCAAATCCAGATGAGTTGGCTGGTTGGATTGGCCAGATTCATGGTAAAACAGAGTTGGTAACATCATCAAAACGTCCAGTTCCACTGACATGGCATTTTTCTATGAAGAATTCCTTATTACCACTTCTTGATGAGAAAGGAACACGCATGAACAGGAAGCTGTCACTCAATTATTTACAACTTCAAGCTGCCGGAGCTAAACCATACAAGGATGATTGGCCTAGGAAAAGGAATTCACGGAGACGAGGAACTCACACAAGCTATGATAATGATGGTAGCATGTTTGAGCAACGTTCTCTTTCAAAGAATAACATAAATGCAATTCGTCGTTCACAAGTTCCTCAAGTAGTTGATACTTTATGGCATCTTCAGTCTAGGGATATGCTGCCTGCTGTGTGGTTTATTTTTAGCAGGAAGGGTTGTGATGCAGCTGTGCAATACCTTGAAGATTGCAGACTATTAGACGATTGTGAAACAAGTGAGGTTGAGCTAGCTTTGAAGAGGTTCCGCATTCAGTATCCTGATGCTGTCAGAGAAACAGCTGTGAGAGGACTTCTGCAAGGGGTTGCTGCACATCATGCTGGTTGCCTACCTTTGTGGAAGGCATTCATAGAAGAACTGTTTCAAAGAGGACTTGTCAAGGTTGTTTTTGCTACAGAAACCTTGGCCGCTGGAATCAATATGCCTGCTAGAACAGCTGTCATTTCGTCACTTAGCAAAAGAAGTGACAGTGGACATGTCTATTTAAGCTCAAATGAACTGCTTCAGATGGCTGGGCGTGCTGGACGCAGAGGCATTGATGAACGTGGTCATGTAGTCCTCATCCAAACACCTAATGACGGTGCTGAGGAGTGTTGCAAAGTCTTGTTTGCTGGACTTGAGCCTTTAGTGTCCCAGTTTACTGCCTCATATGGAATGGTATTGAATCTTCTTTCTGGTGTAAAAGCCATTCGGTCAAATGAATCAGATGAAGTGAGAACTTCATCGGGGAAAACTTTAGAAGAAGCTAGGAAGTTAGTTGAGCAGAGTTTTGGAAATTATGTTAGTAGCAATGTTATGCTGGCCGCCAAGGAAGAAATTAAAAAAATTGAGAATGAAATTGAATCGCTGATGTCAGAAATTACTGACGAAGCCATTGATAGAAAAAGCAGGAAGGCTTTATCACAGTGGGAATACAAAGAGATTACGGAGTTACAGGAAAATTTAAGGGCAGAAAAACGTGTTCGGACTGAATTGCGGAAACAGATGGAAGCAAGGAGAATTTCTGCCCTGAAACCTATACTGGAAGAACCTGAAAGTGGTCATCTACCATTTTTGTGCTTGCAGTATAGAGATTCTGAAGGAGTTCAACATTCAATTCCTGCAGCATATTTGGGGAAGGTTGACTCCCTTAATGCTTCAAAACTCAAGATCATGATTTCTTCAGATGATTCTTTTGCATTAAATTTTGTAGATGCAGAGCCAACAAGTGTTACTGATTCTTCGTTAAATAAACAACTTCAACTATCATATCATGTGGCTCTTGGTTCAGATAACTCCTGGTATCTATTTACAGAAAACTGGATTAAAGCAGTATATGGGACAGGCTTTCCTAATGTTCCATTGGCTCAGGGGGATGCTCTACCTCGAGAAATTATGAGTACTCTCCTTGATAAGGAGGAAATGAAGTGGGATAAGGTTGCTCAATCCGAACATGGTGGTTTATGGTTCATGGATGGATCTCTAGAAACATGGTCTTGGAGTTTGAATGTTCCTGTTTTGAGTAGCTTATCTGAAAGCGATGAGCTACTTTTAAAGTCTCAAGTCTACCAAGATGTCGTTGAACTTTACAAGAACCAAAGAACTAAAGTTGCACGCATGAAGAAAAGGATAACTCGTACTGGAGGGTACAAAGAATATAACAAAATCATAGACGCCGTCAAGTTTACTGAGGAGAAAATCAAACGGCTGAAGACTAGATCAAAACGTTTGACTAATCGTATAGAACAAATTGAACCCGCAGGATGGAAGGAGTTTATGCATGTTAGCAATGTCATACATGAAACCAGAGCTTTAGATATTAATACACATGCCATCTTTCCACTTGGCCAAACTGCGGCTGCAATTCGAGGAGAAAATGAGCTTTGGCTTGCAATGGTTCTTCGCAATAAAAGTTTACTAGAACTAAAACCTGCACAACTTGCTGCAGTTTGTGCAAGTTTAGTATCTGAGGGTATCAAAGTCCGACCTTCAAAAAACAACAGTTATATTTATGAGCCTTCTGCAACTGTAGTCAATTTCGTAAGGTTATTGGATGAGCAAAGAAAGGTCCTGTTGTCAATTCAGGATAAACATGATGTAACAATATCTTGCTGTTTGGATAGTCAATTTAGTGGCATGGTTGAAGCCTGGGCTTCTGGGTTGACATGGAGAGAAATAATGATGGATTGTGCTATGGATGATGGTGATCTAGCTCGCCTCCTTCGTAGGACCATTGACCTTTTAGCTCAGATTCCGAAATTGACAGATATTGATCCATTGTTGCAGCGCAATGCAAAAGTTGCATATGATTTCATGGATCGGCCTCCAATAAGTGAGCTTGCTGGGTAA 3765 0.4263 MTTQVILSHTVPPRFPSSSSSSSKPTTLSFFSFSLLRNHSLLFPLSFSFNSPTSSFPTIQHHNDDDDDDEDVAADDYEEEEEEEEFEGEDEDDGDDVAADDYDDGEATDADDGDAFDVPLSDGAFKWQRVEKLCNEVREFGANIIDADELASVYDFRIDKFQRLAIQAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRRIFYTTPLKALSNQKFREFRETFGDTNVGLLTGDSAINKEAQVLIMTTEILRNMLYQSNSIKKQPMREAPHLVGSVEAVSGIRTHDLLVTSSDLTIVAIRDRDGECAQFGVAEEANSGEEAFTAGTSAALAIVVNDSIVGNVSSGGGLFHVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIHGKTELVTSSKRPVPLTWHFSMKNSLLPLLDEKGTRMNRKLSLNYLQLQAAGAKPYKDDWPRKRNSRRRGTHTSYDNDGSMFEQRSLSKNNINAIRRSQVPQVVDTLWHLQSRDMLPAVWFIFSRKGCDAAVQYLEDCRLLDDCETSEVELALKRFRIQYPDAVRETAVRGLLQGVAAHHAGCLPLWKAFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRSDSGHVYLSSNELLQMAGRAGRRGIDERGHVVLIQTPNDGAEECCKVLFAGLEPLVSQFTASYGMVLNLLSGVKAIRSNESDEVRTSSGKTLEEARKLVEQSFGNYVSSNVMLAAKEEIKKIENEIESLMSEITDEAIDRKSRKALSQWEYKEITELQENLRAEKRVRTELRKQMEARRISALKPILEEPESGHLPFLCLQYRDSEGVQHSIPAAYLGKVDSLNASKLKIMISSDDSFALNFVDAEPTSVTDSSLNKQLQLSYHVALGSDNSWYLFTENWIKAVYGTGFPNVPLAQGDALPREIMSTLLDKEEMKWDKVAQSEHGGLWFMDGSLETWSWSLNVPVLSSLSESDELLLKSQVYQDVVELYKNQRTKVARMKKRITRTGGYKEYNKIIDAVKFTEEKIKRLKTRSKRLTNRIEQIEPAGWKEFMHVSNVIHETRALDINTHAIFPLGQTAAAIRGENELWLAMVLRNKSLLELKPAQLAAVCASLVSEGIKVRPSKNNSYIYEPSATVVNFVRLLDEQRKVLLSIQDKHDVTISCCLDSQFSGMVEAWASGLTWREIMMDCAMDDGDLARLLRRTIDLLAQIPKLTDIDPLLQRNAKVAYDFMDRPPISELAG 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0575 1254 MobiDBLite consensus disorder prediction 1 25 - -
Lal16g0575 1254 MobiDBLite consensus disorder prediction 461 479 - -
Lal16g0575 1254 Coils Coil 1025 1052 - -
Lal16g0575 1254 CDD SF2_C_Ski2 501 669 - -
Lal16g0575 1254 MobiDBLite consensus disorder prediction 57 116 - -
Lal16g0575 1254 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 504 703 IPR001650 -
Lal16g0575 1254 Coils Coil 787 807 - -
Lal16g0575 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 672 IPR027417 -
Lal16g0575 1254 Gene3D - 1034 1246 - -
Lal16g0575 1254 Pfam DSHCT (NUC185) domain 1084 1249 IPR012961 -
Lal16g0575 1254 Pfam DEAD/DEAH box helicase 161 256 IPR011545 GO:0003676|GO:0005524
Lal16g0575 1254 SMART ultradead3 154 424 IPR014001 -
Lal16g0575 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 403 IPR027417 -
Lal16g0575 1254 MobiDBLite consensus disorder prediction 461 485 - -
Lal16g0575 1254 Gene3D - 120 274 IPR027417 -
Lal16g0575 1254 Gene3D - 333 417 IPR027417 -
Lal16g0575 1254 SMART helicmild6 571 657 IPR001650 -
Lal16g0575 1254 Gene3D - 418 688 IPR027417 -
Lal16g0575 1254 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 50 264 - -
Lal16g0575 1254 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 340 1250 - -
Lal16g0575 1254 MobiDBLite consensus disorder prediction 64 116 - -
Lal16g0575 1254 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 166 410 IPR014001 -
Lal16g0575 1254 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH15 CHLOROPLASTIC 340 1250 - -
Lal16g0575 1254 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH15 CHLOROPLASTIC 50 264 - -
Lal16g0575 1254 SMART DSHCT_2 1079 1253 IPR012961 -
Lal16g0575 1254 Coils Coil 745 772 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0575 Lal-Chr16 3708410 3716522 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0575 K26077 - gmx:100780908 1546.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0575 16 3708410 3716522 Lal16g0575 16 3708410 3716522 ECH