Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0572 ATGAAAGCTAAAATGAGAACCCATTTTCACTCTCTCCCACTATTACTTTTCACCCTATCTCTTTTGTTGGGTCAGTCCAGACCCGACCCAGACCCAATTCAAGACTACTGTATTGCAGATAACACTAACACATTTTTCATAAACGGTGTAACATGCATTAATCCAAAACAAGCTTCCTCATCCCATTTTGTGACATCTGCATTATCCAAGTCTGGTAACACAAGTAGTAACAAATTCGGCTTCAGTGTCACTTCCACCAACACTGATAACCTTCCTGGGCTTAACACATTGGGACTTGTATTGGTCCGGGTTGACATAGAGGGTAATGGGATTGTGCCACCTCACGCACACCCACGGGCCTCAGAAGTTACCACTTGTCTCAAGGGCCAGCTTCTTGTGGGCTTTATTGACACGATGAATCGTGTGTTTACTCAGAACTTAAAGCCCGGTGAATCATTTGTGTTCCCAAAGGGCCTGATCCATTTCTTGTTCAACCGTGACTCTAAGCAACCAGCATTGGCCTTGTCTGGTCTCAATAGCCAGAACCCAGGTGTTCAATTAGCATCTGTTGCAACATTTGCTAGCAAGCCTCCTATTCCTGTTCCAATTCTTAAGAAGGCTTTCCAAATTAGTGACAAAGAAGTGGACATGATGCGTAGAAACCTTGGAGGATGA 675 0.4415 MKAKMRTHFHSLPLLLFTLSLLLGQSRPDPDPIQDYCIADNTNTFFINGVTCINPKQASSSHFVTSALSKSGNTSSNKFGFSVTSTNTDNLPGLNTLGLVLVRVDIEGNGIVPPHAHPRASEVTTCLKGQLLVGFIDTMNRVFTQNLKPGESFVFPKGLIHFLFNRDSKQPALALSGLNSQNPGVQLASVATFASKPPIPVPILKKAFQISDKEVDMMRRNLGG 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0572 224 CDD cupin_OxOx 29 222 - -
Lal16g0572 224 SUPERFAMILY RmlC-like cupins 29 220 IPR011051 -
Lal16g0572 224 PRINTS Germin signature 115 135 IPR001929 GO:0030145
Lal16g0572 224 PRINTS Germin signature 145 165 IPR001929 GO:0030145
Lal16g0572 224 PRINTS Germin signature 179 194 IPR001929 GO:0030145
Lal16g0572 224 Pfam Cupin 69 215 IPR006045 -
Lal16g0572 224 SMART Cupin_1_3 66 216 IPR006045 -
Lal16g0572 224 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 14 223 - -
Lal16g0572 224 ProSitePatterns Germin family signature. 110 123 IPR019780 GO:0030145
Lal16g0572 224 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 1 MEMBER 1 14 223 - -
Lal16g0572 224 Gene3D Jelly Rolls 28 224 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0572 Lal-Chr16 3684024 3684698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0572 5 223 Miscellaneous Gene Families AT5G39130 40.807 3.44e-51 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0572 - - lja:Lj2g3v1365980.1 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0572 16 3684024 3684698 Lal16g0572 16 3684024 3684698 ECH