Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0568 ATGTCTACTCATTCTCGCTACCACCATTATTATCTCTTCTCTGCTATTATTATTATTATCTTTCTTTCATTATCGCCCACTTCTGTCTCAGCTCGTTTATTCCCTAACGTCTCTTCTATCCCTACATGGATTTCCAAGAACGCTCCACCAGGCGCGTGGGATGCATACCTCAACTTCACCGGTTGCCGTCAAGGTGAAAACTACGACGGCCTCTCCAAACTCAAAACCTATTTCAACCAATTCGGTTACATACCCAACGCGCCGTCGTCTTCAAACTTCACCGACGACTTCGATGATGCCTTTGAGGCTGCCGTCCGTAACTACCAGAAGAACTTCAACCTCAACGTCACCGGATTTCTTGACAACGCCACGCTTAATCAGGTGGTGAAGCCACGCTGCGGCGTCGCTGATATAATCAACGGAACCACATCCATGAACTCCGGCAAAACCAATTCAACCGCTTCAAGCAACAACACTCTTAAATTCCACACAGTTTCTCACTACACTTTCTTCTCTGAAATGCAACGTTGGCCAGAGGGAACGCAAGAGTTGACCTACGCGTTTGAACCAAACAACGGCCTCGACGACGTCGTCAAAGGCGTGTTCTCAAACGCTTTTGATCGTTGGTCAGAAGTAACAACAATAACGTTCCGCGAAACGACGTCGTATGAAAGCGCTGATATTAAAATAGGGTTTTACAGTGGGGACCACGGTGACGGGGAACCGTTTGATGGAGTTCTTGGAACACTGGCGCACGCATTCTCGCCGACGAACGGGAGGTTGCATTTAGACGGGGCAGAGGATTGGGTGGCTACCGGAGATGTGACGGCGTCGGATCTAACGACGGCGGTGGATCTGGAATCGGTGGCGGTACATGAGATTGGACACTTATTAGGGTTAGGACACTCGTCAGTGGAGGAAGCTATTATGTATCCGACGATAGGAGCGAGAACGAGGAAGGTTGAACTCGCGGACGATGATATTCAAGGGATTCAGGTTTTATATGGATCCAACCCTAATTTCACAGGCTCAACTACCACCAGTTCCAGAGAGAATGACTCTAGCAATGGTTTTCGTCACGAGGGATCCACGTGGATAATGCTCTTTCTCTTATTCCTTGCTTTTGCACATTGGATTTGTTAG 1143 0.4821 MSTHSRYHHYYLFSAIIIIIFLSLSPTSVSARLFPNVSSIPTWISKNAPPGAWDAYLNFTGCRQGENYDGLSKLKTYFNQFGYIPNAPSSSNFTDDFDDAFEAAVRNYQKNFNLNVTGFLDNATLNQVVKPRCGVADIINGTTSMNSGKTNSTASSNNTLKFHTVSHYTFFSEMQRWPEGTQELTYAFEPNNGLDDVVKGVFSNAFDRWSEVTTITFRETTSYESADIKIGFYSGDHGDGEPFDGVLGTLAHAFSPTNGRLHLDGAEDWVATGDVTASDLTTAVDLESVAVHEIGHLLGLGHSSVEEAIMYPTIGARTRKVELADDDIQGIQVLYGSNPNFTGSTTTSSRENDSSNGFRHEGSTWIMLFLLFLAFAHWIC 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0568 380 PANTHER MATRIX METALLOPROTEINASE 11 373 - -
Lal16g0568 380 PANTHER MATRIX METALLOPROTEINASE 11 373 - -
Lal16g0568 380 SMART col_5 173 337 IPR006026 GO:0006508|GO:0008237|GO:0008270
Lal16g0568 380 Pfam Putative peptidoglycan binding domain 71 127 IPR002477 -
Lal16g0568 380 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 171 339 - -
Lal16g0568 380 CDD ZnMc_MMP 176 336 IPR033739 GO:0008237|GO:0008270
Lal16g0568 380 Pfam Matrixin 181 336 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Lal16g0568 380 SUPERFAMILY PGBD-like 59 138 IPR036365 -
Lal16g0568 380 Gene3D Collagenase (Catalytic Domain) 59 342 IPR024079 GO:0008237
Lal16g0568 380 PRINTS Matrixin signature 128 141 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lal16g0568 380 PRINTS Matrixin signature 202 217 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lal16g0568 380 PRINTS Matrixin signature 226 254 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lal16g0568 380 PRINTS Matrixin signature 289 314 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lal16g0568 380 PRINTS Matrixin signature 323 336 IPR021190 GO:0004222|GO:0006508|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0568 Lal-Chr16 3665572 3666714 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0568 - - gmx:100803218 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0568 16 3665572 3666714 Lal16g0568 16 3665572 3666714 ECH