Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0525 ATGAAGAGGAACCGAAGTTGTTTTGTAATGTCATTGTTGATGATGGTGTTTGTTACCTTCTCCATAGTTTATGTGGAGGCAAGAAATAAGAATCATAACAAGAGCAAACTTCATAAAACTCACAAAAACAGTAGCAATGGCCACACTAGAGGAGGTTCATCTTCTCCGCTTCCTCCTCCAACCCAAATGGGCACTTTCAATGTTATGTGTTTTGGCGCCAAGGGAAATGGAATTTCTGATGATTCAATGGCACTTCGAGCTGCATGGAATGGTGCCTGCGAAGTTGTTGGTGCTACAGTTAGAATTCCAGCAAAACTCAAGTTCCTCATCATGCCCATTACTTTACAAGGCCCTTGTTTGCCTGGCCTTACTCTTCAGATAGATGGGGCTCTATTAGCTCCTCCTGATGCATCATCCTGGCCAAAATCCAGTTTGTTTCAGTGGATAAATTTCAAATGGGTGCAGAATTTCACCATCAAAGGCTCTGGCACGGTTGATGGCCAAGGCTCTAACTGGTGGAGCTCCTCAGAATCTTATGATATGCAGAAGAGCTATTATTCTAAACACATTCCAGACATGAAACCAACAGCTATAAGATTCTACGCCAGCAATTATATTGTAGTTCGTGACATTAAAATCATTAACAGTCCTCTATGCCATTTAAAGTTTGACAGCTCAAAGGGGATAAATGTTAATAACATAACAATTTCTTCACCTGAGAATAGCCCAAATACTGATGGCATTCACTTGCAGAACACACAGGATGTAGAAATTCAACATTCTCATATTGGAACTGGAGATGACTGTATCTCCATCCAAACCGGTTGTTCAAATGTTCATGTCCACCACATTAATTGTGGCCCTGGGCATGGTATAAGTTTAGGAGGATTAGGGAAAGACAATAGTATGGCATGTGTATCTAACATCATAGTGGAGGATATCACAATGAGAAATACACTATATGGAGCAAGGATCAAAACATGGCAGGGAGGCATTGGTATTGTTAAAAATGTGTCATTTTCCAGAATCCAAGTCTATGATGTTAGTTATCCAATTACAATCAATCAATACTACTGTGACAAACATATCTGCAAGAACCAAACAGGAACAGTGGTGATTTCAGGAGTAAAGTTTGATCAAATAAGTGGTAGTTATGCAACACAACCTGTTCATCTAGCTTGCAGCAATTCCATTCCATGCACAGATGTTGATTTAACAGACATTCAACTGAGGCCATCTCTCACAAATAGAAATTTTCAACAAACTTCATGTTTGAACTCTTATGGAAAATCACAAGGCTCCATGCTACCTTCAAGCATTGATTATTGTTTGAGAAGTGGTGGTGGATCAATCAAGAGGATAGCAAGGTCACGTGATCATAGTTTATGTTACTAA 1395 0.3957 MKRNRSCFVMSLLMMVFVTFSIVYVEARNKNHNKSKLHKTHKNSSNGHTRGGSSSPLPPPTQMGTFNVMCFGAKGNGISDDSMALRAAWNGACEVVGATVRIPAKLKFLIMPITLQGPCLPGLTLQIDGALLAPPDASSWPKSSLFQWINFKWVQNFTIKGSGTVDGQGSNWWSSSESYDMQKSYYSKHIPDMKPTAIRFYASNYIVVRDIKIINSPLCHLKFDSSKGINVNNITISSPENSPNTDGIHLQNTQDVEIQHSHIGTGDDCISIQTGCSNVHVHHINCGPGHGISLGGLGKDNSMACVSNIIVEDITMRNTLYGARIKTWQGGIGIVKNVSFSRIQVYDVSYPITINQYYCDKHICKNQTGTVVISGVKFDQISGSYATQPVHLACSNSIPCTDVDLTDIQLRPSLTNRNFQQTSCLNSYGKSQGSMLPSSIDYCLRSGGGSIKRIARSRDHSLCY 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0525 464 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 17 451 - -
Lal16g0525 464 Pfam Glycosyl hydrolases family 28 97 413 IPR000743 GO:0004650|GO:0005975
Lal16g0525 464 PANTHER - 17 451 - -
Lal16g0525 464 SMART pbh1 253 274 IPR006626 -
Lal16g0525 464 SMART pbh1 276 296 IPR006626 -
Lal16g0525 464 SMART pbh1 306 327 IPR006626 -
Lal16g0525 464 SMART pbh1 226 252 IPR006626 -
Lal16g0525 464 SMART pbh1 335 356 IPR006626 -
Lal16g0525 464 Gene3D - 50 445 IPR012334 -
Lal16g0525 464 MobiDBLite consensus disorder prediction 33 59 - -
Lal16g0525 464 SUPERFAMILY Pectin lyase-like 56 440 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0525 Lal-Chr16 3334435 3337363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0525 1 459 Glycoside Hydrolase AT3G26610 58.635 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0525 K01213 - gmx:100803027 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0525 16 3334435 3337363 Lal16g0525 16 3334435 3337363 ECH