Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0523 ATGGCAGGGGCTGCCTCTGCTCTTTTCCTTCTCGACATCAAAGGCCACATCCTCATCTGGCGCGACTATCGCGGTGATGTCTCCGCCGTCGAAGCTGAACGATTCTTCACCAAACTCATCGACAAAGAGATTGATGCGCTGTCTCAAGATCCAGTTGTGTTTGATAATGGCGTCACCTACATGTTCGTACAACACAGTAACGTTTACCTCATGATTGCTGCTAGACAAAACTGTAATGCCGCTAGCCTTCTCTTTTTCCTTCACCGTATAGTTGATGTATTTAAGCACTACTTTGAAGAATTGGAAGAGGAATCTCTGAGGGATAACTTTGTCGTTGTGTATGAACTACTTGATGAAATTATGGACTTCGGATACCCTCAATATACTGAGGCAAAGATTCTCAGTGAATTTATCAAGACGGATGCTTACAGAATGGAAGTTACACAGAGACCTCCCATGGCTGTTACAAATGCTGTGTCGTGGCGCAGTGAAGGGATAAACTACAAGAAAAATGAGGTGGTTTTCTTAGATGTGGTGGAGAGTGTTAACATACTTGTCAATAGCAATGGACAAATAATTAGGTCTGATGTTGTCGGGGCACTAAAGATGAGAACATATTTGAGTGGTATGCCTGAGTGTAAACTTGGCTTAAATGATAGAGTATTATTAGAGGCCCAAGGTAGAACAACCAAGGGAAAGGCAATAGACTTGGAAGACATCAAATTTCACCAGTGTGTGCGTTTGGCTCGATTCGAAAATGATCGAACAATTTCCTTCATACCACCTGATGGAGCATTTGATTTGATGACTTACAGGCTCAGTACACAGGTTAAGCCATTAATTTGGGTGGAAGCACAAGTTGAAAAGCATTCAAAGAGTCGGATTGAGATTATGGTAAAAGCTAGGAGCCAATTTAAGGAACGTAGCACTGCTACAAGCGTTGAGATTGAGTTGCCTGTGCCTGTTGATGCTACCAATCCAAATGTTCGAACTTCAATGGGATCTGCATCGTATGCACCTGAAAAAGATGCATTAGTCTGGAAAATAAGATCCTTCCCTGGAGGCAAGGAGTATATGTTAAGAGCCGAGTTTCGTCTTCCCAGTATAACAGATGAGGAAGCAACTCCCGAGAGAAAAGCTCCTATACGTGTCAAATTTGAGATACCATATTTTACTGTTTCTGGAATACAGGTAAGATATTTGAAGATTATTGAAAAAAGTGGGTATCAGGCTCTACCATGGGTGAGATACATAACAATGGCAGGAGAGTATGAACTAAGGCTTGTCTAA 1290 0.4202 MAGAASALFLLDIKGHILIWRDYRGDVSAVEAERFFTKLIDKEIDALSQDPVVFDNGVTYMFVQHSNVYLMIAARQNCNAASLLFFLHRIVDVFKHYFEELEEESLRDNFVVVYELLDEIMDFGYPQYTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGINYKKNEVVFLDVVESVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRTTKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGAFDLMTYRLSTQVKPLIWVEAQVEKHSKSRIEIMVKARSQFKERSTATSVEIELPVPVDATNPNVRTSMGSASYAPEKDALVWKIRSFPGGKEYMLRAEFRLPSITDEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLV 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0523 429 Pfam Clathrin adaptor complex small chain 7 131 IPR022775 -
Lal16g0523 429 PRINTS Clathrin coat assembly protein signature 15 35 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lal16g0523 429 PRINTS Clathrin coat assembly protein signature 103 130 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lal16g0523 429 PRINTS Clathrin coat assembly protein signature 162 190 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lal16g0523 429 PRINTS Clathrin coat assembly protein signature 237 264 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lal16g0523 429 PRINTS Clathrin coat assembly protein signature 306 321 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lal16g0523 429 PRINTS Clathrin coat assembly protein signature 346 357 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lal16g0523 429 CDD AP1_Mu_N 6 145 - -
Lal16g0523 429 Pfam Adaptor complexes medium subunit family 159 427 IPR028565 -
Lal16g0523 429 Gene3D Mu homology domain, subdomain B 166 423 - -
Lal16g0523 429 ProSiteProfiles Mu homology domain (MHD) profile. 171 427 IPR028565 -
Lal16g0523 429 Gene3D - 5 146 - -
Lal16g0523 429 SUPERFAMILY SNARE-like 6 141 IPR011012 -
Lal16g0523 429 ProSitePatterns Clathrin adaptor complexes medium chain signature 2. 257 271 IPR018240 GO:0006886|GO:0016192|GO:0030131
Lal16g0523 429 PIRSF AP_complex_mu 4 429 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lal16g0523 429 PANTHER ASSEMBLY PROTEIN AP47, PUTATIVE-RELATED 1 428 - -
Lal16g0523 429 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 159 427 IPR036168 -
Lal16g0523 429 PANTHER AP COMPLEX SUBUNIT MU 1 428 - -
Lal16g0523 429 Gene3D Mu homology domain, subdomain B 279 427 - -
Lal16g0523 429 CDD AP-1_Mu1_Cterm 156 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0523 Lal-Chr16 3316203 3320611 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0523 K12393 - gmx:100808175 815.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0523 16 3316203 3320611 Lal16g0523 16 3316203 3320611 ECH