Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0487 ATGTCTCTTTGCAGCACCTTTGTTAACTCAAACCTGCACCCTCTCCTTCCAATATTCCACAAAACTCGAACTCCAAATAATGGTTCCATAAAACAGTTATGTGTGAGGGCTGCTGGTTCAACAAGTAATCACTCAGAAGAAGATGGAGAAAGGACGATTATAAAGAAAGAGAAAGATGGGTGGAACATCAATTTCTCATCTCAGAAACCAGCAACTCCATTGCTGGATACAATCAATTACCCACTTCATATGAAGAATTTATCCATACAGGATCTTGAACAACTTGCTGCAGAGTTAAGGGCAGACATAGTGCATACAGTGTCAAATATTGGTGGACATCTTAGCTCAAATTTGGGAGTAGTGGAACTATCAGTGGCACTGCATCATGTTTTCAGCACTCCTCAAGACAAGATCATATGGGATGTTGGCCACCAGGCATACCCACACAAGATTCTCACAGGTAGAAGGTCTAGGATGCACACCATTAGGAAAACTTCAGGACTAGCTGGCTTTCCTAAAAGAGATGAGAGTGCACATGATGCTTTTGGAGCAGGCCATAGTTCTACAAGTATATCTGCTGGTCTTGGGATGGCAGTTGCAAGGGATCTATTGGGAAAGAACAACAGCGTCATCTCGGTGATTGGAGATGGGGCAATGACTGCGGGACAAGCATATGAGGCCATGAACAATGCTGGATTCCTTGATGCTAACATGATAATTATACTTAATGATAACAAACAAGTTTCTTTACCAACTGCTACACTTGATGGCCCTGCAACTCCAGTTGGAGCCCTTAGTAGAAACTTAAGCAAAATTCAAGCAAGCACCAAATTCCGCAAACTCAGAGAAGCTGCAAAAACCATCACAAAGCAAATAGGAGGACAAACACACCAAGTTGCAGCTAAGGTAGATGAATATGCAAGAGGTATGATCAGTGGTTCTGGTTCCACATTTTTTGAGGAGCTTGGCTTATACTATATTGGACCTGTGGATGGTCACAACATTGAAGATTTGGTCCACATTTTTGAAAATGTGAAAGCAATGCCTGCCCCAGGTCCTATTTTGATTCATGTTGTGACAGAGAAAGGGAAGGGATACCCCCCAGCAGAAGCAGCTTCTGATAAAATGCATGGTGTTGTCAAGTTTGACCCACCATCTGGCCAGCAGTTTAAGCAAAAATCTTCTACACTTACATACACCCAGTACTTTGCTGAATCCTTGATCAAAGAAGCTGAAATTGACAACAAGATAGTAGCTATACATGCAGCAATGGGTGGTGGGACAGGTCTAAATTATTTCCAAAAACGGTTTCCAGACCGCTGCTTTGACACGGGTATAGCTGAACAACACGCTGTGACGTTTGCAGCTGGTTTAGCAGCAGAAGGTCTTAAGCCATTTTGTGCAATCTATTCATCATTCCTGCAACGTGGATATGATCAGGTGGTCCATGATGTAGATCTTCAGAAACTACCTGTCCGATTTGCCATAGATAGAGCTGGTTTGGTAGGTGCAGATGGACCAACACACTGTGGAGCATTTGATATCACATACATGGCCTGCTTACCCAACATGGTGGTCATGGCTCCATCTGATGAAACTGAATTGATGCACATGGTCGCAACAGCAGCAGCGATAGATGACAGACCAAGCTGCTTTAGATTTCCAAGAGGCAATGGAATTGGATCCATTTTACCCCTCAATAACAAAGGAACCCCACTAGAGATAGGAAAGGGCAGAATTATGTTAGAAGGCAGCAGAATTGCTATTTTAGGATATGGTTCTGTAGTTCAACAATGCCTGCAAGCTGCACAAATGCTCAAAACACAAGACATTTCTGTGACAGTTGCTGATGCAAGGTTTTGCAAACCTTTGGATACCGATCTCATTAAGCGATTAGCTAAGGAGCATGAATTTCTCATCACAGTGGAAGAGGGTTCTATTGGAGGTTTTGGATCACATGTTTCACAGTACCTAAGCATAACTGGTATCTTGGATGGGCCTCTGAAGTGGAGAGCAATGATGCTTCCTGATAGATACATTGAGCATGGAGCACCACAAGATCAGACTGAAGAAGCCGGGCTTTCATCAAAGCATATTGCCGCAACAATCTTGTCTCTTCTTGATAGGCCAAAAGAAGCTCTCTTGTTCAAGTAA 2154 0.4304 MSLCSTFVNSNLHPLLPIFHKTRTPNNGSIKQLCVRAAGSTSNHSEEDGERTIIKKEKDGWNINFSSQKPATPLLDTINYPLHMKNLSIQDLEQLAAELRADIVHTVSNIGGHLSSNLGVVELSVALHHVFSTPQDKIIWDVGHQAYPHKILTGRRSRMHTIRKTSGLAGFPKRDESAHDAFGAGHSSTSISAGLGMAVARDLLGKNNSVISVIGDGAMTAGQAYEAMNNAGFLDANMIIILNDNKQVSLPTATLDGPATPVGALSRNLSKIQASTKFRKLREAAKTITKQIGGQTHQVAAKVDEYARGMISGSGSTFFEELGLYYIGPVDGHNIEDLVHIFENVKAMPAPGPILIHVVTEKGKGYPPAEAASDKMHGVVKFDPPSGQQFKQKSSTLTYTQYFAESLIKEAEIDNKIVAIHAAMGGGTGLNYFQKRFPDRCFDTGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDETELMHMVATAAAIDDRPSCFRFPRGNGIGSILPLNNKGTPLEIGKGRIMLEGSRIAILGYGSVVQQCLQAAQMLKTQDISVTVADARFCKPLDTDLIKRLAKEHEFLITVEEGSIGGFGSHVSQYLSITGILDGPLKWRAMMLPDRYIEHGAPQDQTEEAGLSSKHIAATILSLLDRPKEALLFK 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0487 717 CDD TPP_DXS 111 366 IPR005477 GO:0008661|GO:0016114
Lal16g0487 717 SUPERFAMILY TK C-terminal domain-like 571 707 IPR009014 GO:0003824
Lal16g0487 717 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 374 558 IPR029061 -
Lal16g0487 717 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 77 707 IPR005477 GO:0008661|GO:0016114
Lal16g0487 717 ProSitePatterns Transketolase signature 1. 100 119 IPR005474 -
Lal16g0487 717 Gene3D - 576 708 IPR009014 GO:0003824
Lal16g0487 717 SMART Transket_pyr_3 397 562 IPR005475 -
Lal16g0487 717 Gene3D - 67 369 - -
Lal16g0487 717 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 75 360 IPR005477 GO:0008661|GO:0016114
Lal16g0487 717 ProSitePatterns Transketolase signature 2. 503 519 IPR020826 -
Lal16g0487 717 CDD TPP_PYR_DXS_TK_like 403 556 - -
Lal16g0487 717 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 72 428 IPR029061 -
Lal16g0487 717 Pfam Transketolase, C-terminal domain 576 699 IPR033248 -
Lal16g0487 717 PANTHER 1-DEOXY-D-XYLULOSE-5-PHOSPHATE SYNTHASE 2, CHLOROPLASTIC-RELATED 2 717 - -
Lal16g0487 717 Gene3D - 397 563 - -
Lal16g0487 717 Coils Coil 82 102 - -
Lal16g0487 717 Pfam Transketolase, pyrimidine binding domain 397 558 IPR005475 -
Lal16g0487 717 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 2 717 IPR005477 GO:0008661|GO:0016114
Lal16g0487 717 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 74 708 IPR005477 GO:0008661|GO:0016114
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0487 Lal-Chr16 3050436 3054531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0487 440 655 Acyl Lipid Metabolism Gene Families AT3G13450 23.009 4.14e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0487 K01662 - gmx:100799481 1252.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0487 16 3050436 3054531 Lal16g0487 16 3050436 3054531 ECH