Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0385 ATGCCACAAAGGACTTCACATATTGAAGATATCCATTTTGAGCTTGTTGTTTATTACATTAAATCATTACTCAAACAACCTAGAATTGTTACTGCAACTCTTGGCCATTGTTCAGCTTTAAAGATAGGTGCTCTAGCTCACCTCCCCACTTCAACATCTCTACTCACTGTTTATTCTAAAGCTGGATACTTCAACTATTCATGGTATTTGTTTCATGACATTCACAACAGAGATGTTATTGCTTGGAATGCTATTATTTCTGCTTCTATTGAAAATAACTATTACAGGACAGCAATGGACTTCTTTGAGGAAATGATAAAATCCCAATATGGGTTTGATTCCACCACTCTATTGCTTATGGTATCAGCTTCACTGCACATGAAAAACTGTGATCAAGGGTGTGCAATGCATTGTTTGAGTATAAAATCGGGAATGTTTGTGGATATTAGTTTAGGTAATGCTCTCACTGATATGTATGCAAAATGTGGTGATTTAAGCTCTTCTGAGTGTGTATTTGAAGATATGGAATATAAAGATATTGTTTCATGGAATTCAATACTGACAGGAAGTCTTTACAATTGTGACCCAGAGAGATCACTGTATTACTTCAAAAGGATGAGTTTTTCTGAAGAAGCTGCAGATGAAGTCAGTTTATCTTGTGCTATTTCGGCCTCTTTAAGTTTGGGAGACCTGGCTTTTGCTCATTCTATTCATGGCCTGGGAATCAAACTAGGTTATAAGGACAGCTCACATGTTTCGGTAGCCAACTCTCTCATTTCACTATATTCAGAATGTGCTGACATTGATGCTGCCGAGAGTGTATTCAGAGAAATATCACACAAAGATATTGTTTCCTGGAATGCAATGATGGAAGGATTTGCTTCAAATGAGTTGATTAATGAAGCATTTAATCTTCTCCTTGAAATGAAAATGACCGGACCTTTCCAGCCTGATACAGTAACATTGACTATCATACTGCCACTTTGTGCAGAGCTGATGTTGTCCAGAGAAGGAAGAACTATCCATGGATTTGTAATTCGAAGGCAGATGGTATCTGATCATCTTCCTTTGTTGAATAGCCTAATAGACATGTACTCAAAGTGCAACCTTGTGGAGAAAGCCCGGCTACTGTTTAACTCTGCCACAGAGAGAGACTTGGTCTCTTGGAATGCAATGATATCTGGGTATTCCCAAAACAAGTATTCTGAAGAAGCTCAAAACCTGTTCAGAGAGCTGTTATATAGAGGTCCATATTGCAGCTCATCAACTGTTTTTGCTATTCTTTCTTCCTGCAACTCCCTTAACAGTCTCCACTTCGGAAAATCAGTTCACTGCTGGCAGATGAAATCTGGATTTCTGAGCCATATTCTTTTAGTAAATTCTGTAATGCACATGTATATCAACTGTGGAGAATTGAGATCAGGTTTCTCAATTTTGTATGATAATTCTGATTTAGCTGACATTGCTTCATGGAACACTGCAATTGTGGGCTGTGTACGAGGTGATCATCATGAAGAGGCTCTAGAAACTTTTGGTTTAATGCGACTACAACCTTCTCTCAACTATGACTCCATTACTCTCGTAAGTATGTTCTCAGCCTGTGCACACATGGAACTACTCAACCTTGGAAAATCTCTCCACGGCCTTGTCCTAAAGTCTCCTTTGGGATCAAATACTCGTGTTCAGAACTCGATAATTACAATGTACGACAGATGCAGGGACATCAACAGTGCAAGAGCTGTGTTTAAATTCTGCTCTACTCCCAATCTATGCTCGTGGAATTGCATGATCTCAGCTTTATCTCATAACAAAGAATGTAGAGAAGCATTGGAACTCTTTCGTCATCTTCATTTTAAACCAAATGAGATCACCATTGTTAGTGTTCTCTCCATTTGCACTCAAATTGGTGTCCTAAGACATGGAAAACAGGTTCACGCCCAAGTGTTTAGGTCTGGAATTCAGGATAACTCTTTCATCTCAGCGGCTCTTGTGGATCTGTATAGCAAGTGTGGACGATTGGACATTGCTATCCAAGTATTCAAACATGCTGAGGAGAAGTCTGAATCAGCTTGGAATTCAATGATTGCTGCATATGGTAATCATGGAAATGGTGAGAAAGCAATCAAACTCTTCCATGAAATGATTGAGTCGGGATCAAGGGTGACCAAAAGCACCTTTGTAAGCCTTTTATCTGCATGCAGACACTCAGGACTCATCAACCAAGGTCTTTGGTACTATGAGCATATGTTGGATAAATATGGGGTGCAACCAGAGACTGAGCATCAAGTTTATATGGTCGACATGCTCGGTCGATCAGGTAGGCTAGATGAGGCTTACGAGTTTACTAAGGGATTACAGTCCAATGCCAGCTCAGGTGTATGGGGAAGTCTCCTAAGTGCATGCAACTATCATGGAGAACTCAAGTTGGGGAAACAAATAGCTGAACATCTATTTCAAGTGGAACCTCAAAATGTTGGATATTACATATCATTGTCAAATATGTATGTTGCTGCAGGAAGCTGGAAAGATGCTACTGACTTGAGACAATTTATCCACGACCAAGGATTAAGGAAAGCCGCAGGTTATAGCCTTATTGATGTTTGTTTGGGATAA 2613 0.3957 MPQRTSHIEDIHFELVVYYIKSLLKQPRIVTATLGHCSALKIGALAHLPTSTSLLTVYSKAGYFNYSWYLFHDIHNRDVIAWNAIISASIENNYYRTAMDFFEEMIKSQYGFDSTTLLLMVSASLHMKNCDQGCAMHCLSIKSGMFVDISLGNALTDMYAKCGDLSSSECVFEDMEYKDIVSWNSILTGSLYNCDPERSLYYFKRMSFSEEAADEVSLSCAISASLSLGDLAFAHSIHGLGIKLGYKDSSHVSVANSLISLYSECADIDAAESVFREISHKDIVSWNAMMEGFASNELINEAFNLLLEMKMTGPFQPDTVTLTIILPLCAELMLSREGRTIHGFVIRRQMVSDHLPLLNSLIDMYSKCNLVEKARLLFNSATERDLVSWNAMISGYSQNKYSEEAQNLFRELLYRGPYCSSSTVFAILSSCNSLNSLHFGKSVHCWQMKSGFLSHILLVNSVMHMYINCGELRSGFSILYDNSDLADIASWNTAIVGCVRGDHHEEALETFGLMRLQPSLNYDSITLVSMFSACAHMELLNLGKSLHGLVLKSPLGSNTRVQNSIITMYDRCRDINSARAVFKFCSTPNLCSWNCMISALSHNKECREALELFRHLHFKPNEITIVSVLSICTQIGVLRHGKQVHAQVFRSGIQDNSFISAALVDLYSKCGRLDIAIQVFKHAEEKSESAWNSMIAAYGNHGNGEKAIKLFHEMIESGSRVTKSTFVSLLSACRHSGLINQGLWYYEHMLDKYGVQPETEHQVYMVDMLGRSGRLDEAYEFTKGLQSNASSGVWGSLLSACNYHGELKLGKQIAEHLFQVEPQNVGYYISLSNMYVAAGSWKDATDLRQFIHDQGLRKAAGYSLIDVCLG 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0385 870 Pfam PPR repeat family 281 327 IPR002885 -
Lal16g0385 870 Pfam PPR repeat family 689 733 IPR002885 -
Lal16g0385 870 Gene3D Tetratricopeptide repeat domain 336 440 IPR011990 GO:0005515
Lal16g0385 870 Gene3D Tetratricopeptide repeat domain 243 335 IPR011990 GO:0005515
Lal16g0385 870 Gene3D Tetratricopeptide repeat domain 639 739 IPR011990 GO:0005515
Lal16g0385 870 SUPERFAMILY TPR-like 616 847 IPR011990 GO:0005515
Lal16g0385 870 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 687 721 IPR002885 -
Lal16g0385 870 Gene3D Tetratricopeptide repeat domain 136 240 IPR011990 GO:0005515
Lal16g0385 870 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Lal16g0385 870 Gene3D Tetratricopeptide repeat domain 516 638 IPR011990 GO:0005515
Lal16g0385 870 Gene3D Tetratricopeptide repeat domain 36 135 IPR011990 GO:0005515
Lal16g0385 870 Gene3D Tetratricopeptide repeat domain 740 864 IPR011990 GO:0005515
Lal16g0385 870 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 32 326 - -
Lal16g0385 870 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 421 867 - -
Lal16g0385 870 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 309 615 - -
Lal16g0385 870 Pfam E motif 804 865 IPR046848 -
Lal16g0385 870 Pfam PPR repeat 387 416 IPR002885 -
Lal16g0385 870 Pfam PPR repeat 153 179 IPR002885 -
Lal16g0385 870 Pfam PPR repeat 490 515 IPR002885 -
Lal16g0385 870 Pfam PPR repeat 81 108 IPR002885 -
Lal16g0385 870 Pfam PPR repeat 662 685 IPR002885 -
Lal16g0385 870 Pfam PPR repeat 359 382 IPR002885 -
Lal16g0385 870 Pfam PPR repeat 592 614 IPR002885 -
Lal16g0385 870 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 78 112 IPR002885 -
Lal16g0385 870 TIGRFAM PPR: pentatricopeptide repeat domain 284 313 IPR002885 -
Lal16g0385 870 TIGRFAM PPR: pentatricopeptide repeat domain 592 617 IPR002885 -
Lal16g0385 870 TIGRFAM PPR: pentatricopeptide repeat domain 690 720 IPR002885 -
Lal16g0385 870 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0385 Lal-Chr16 2319663 2322275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0385 214 867 Glycoside Hydrolase AT3G49170 30.389 5.44e-103 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0385 - - gmx:100775736 1355.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0385 16 2319663 2322275 Lal16g0385 16 2319663 2322275 ECH