Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0352 ATGTTGAAAGGTTCCAAACGTGTAGCTACCTCTGAACCCAACCGATCCGACAACAACAACGAAACGACGTTCCCGAATAAAAGAATAATGGAAGGCTCTCTCTTTGATTTTCGTAGGGCAGAGCCATCCCAAGAACCAATGGTGGCAACACCACCATTGGATATGAAACAGGCCGAGTCATCACAGCAGCATGTGAGAGCCTTAAATACCCAGTTTGCAAGCTGGGTTCAAACACAACTAAAGAACCATCCTGATGAGCTTTGGGAAGATGGTATCAGAGATTACTTAGATCATGCTTCAAGTATTATGGCAAAATTCAGTGATGTTGTAAAGTGGCTCAAAGCAAATGCCACCAAGGGAGAAAATTTGGTTGCTGAGGCCGGTGCTTCTTTTGGCGGGAAAAAAATCTTGTCCGAATTATCAAACAGAGAAAATAACAGCTTTGGAGAAAAAACTGGGTCTATGCCAATCAGTCAAAACCTTTTTACATTTGGAAATCAGAGTTCAACTCCCTCTAACCATGACGCTTCAGATGATGTAGATGGTGAAAATGACCTGGAGTGCCCTAGCAGTCCATCAGTGAAGAAGTCAGAAGAGAAAGGTATAGTGGTTGTGCATGAAGTGAAGTGCAAGCTTTACGTGAAGTCAAGTGACCCAGCAGATAAGGATGCATGGAAAGATAAAGGGATGGGCCAGCTGTCTATTAAATGCAAAGAGTGTATCCCCAAGGCTACCAAAGAGTCAAAACCTACAATCATTGTTCGCAATGAGGCAGGAAAAATTCTTCTCAATGCTTTGCTGTATCCAGGAATCAAGACAAATCTGCAGAAGAACTCTGTTGTTGCAATATTTCATACTTCGGGTAATGTTGGTGGGAGTGGAGATAATGATAGTGTTGTTGCAAGTACATTCTTGATCCGAATGAAAACAGAAGAAGATAGAAATAAATTGGCATCAATTATCCAAGAATATGCTCCAGCATCTTGA 987 0.4184 MLKGSKRVATSEPNRSDNNNETTFPNKRIMEGSLFDFRRAEPSQEPMVATPPLDMKQAESSQQHVRALNTQFASWVQTQLKNHPDELWEDGIRDYLDHASSIMAKFSDVVKWLKANATKGENLVAEAGASFGGKKILSELSNRENNSFGEKTGSMPISQNLFTFGNQSSTPSNHDASDDVDGENDLECPSSPSVKKSEEKGIVVVHEVKCKLYVKSSDPADKDAWKDKGMGQLSIKCKECIPKATKESKPTIIVRNEAGKILLNALLYPGIKTNLQKNSVVAIFHTSGNVGGSGDNDSVVASTFLIRMKTEEDRNKLASIIQEYAPAS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0352 328 Pfam RanBP1 domain 194 323 IPR000156 GO:0046907
Lal16g0352 328 MobiDBLite consensus disorder prediction 9 27 - -
Lal16g0352 328 MobiDBLite consensus disorder prediction 161 175 - -
Lal16g0352 328 ProSiteProfiles Ran binding domain type 1 profile. 196 328 IPR000156 GO:0046907
Lal16g0352 328 PANTHER RAN BINDING PROTEIN 6 327 IPR045255 -
Lal16g0352 328 CDD RanBD_NUP50 198 325 - -
Lal16g0352 328 SUPERFAMILY PH domain-like 196 325 - -
Lal16g0352 328 MobiDBLite consensus disorder prediction 161 194 - -
Lal16g0352 328 MobiDBLite consensus disorder prediction 1 28 - -
Lal16g0352 328 Gene3D - 125 327 IPR011993 -
Lal16g0352 328 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP50 6 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0352 Lal-Chr16 2136948 2142664 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0352 K14295 - gmx:100816975 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0352 16 2136948 2142664 Lal16g0352 16 2136948 2142664 ECH