Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0351 GCTGCTGGAAATTTTCTGCCTAGCGCAAGATTACTGAGTTCCATGGAGGATGACCTCTTTCAAGAGCAGAAATTACCACATGGTCTCATAAAAGCAATAAAGTTGGATGTCTTAAATGAGGCGGATATAGTTAAGTATATTCTTCTTTGTATATCTATATCAGCTTTCGAACTAGTTAAGTTCATTGTTGCTATAGCAATGGAATTAGATCAAATGGCATGCACTCACTGTGATAAAATAGCTGCTTTGGAGATAAATGCAGCCGGGCAGGTCAACTGTTCTGACCTGGGACTCCCCAATCTATCTTCTGAGTGCACAACATGTGGTGGTAAATCTTCAGTTAAAAATTCTTGTGAAGGTCATTATGGAGTAATCAAATTTCCTTTTGTAATACTCCATCCATATTTTATGTCTGAGATTGCACAAATCTTGAACAAAATTTGCCCTGGATGTAAATCTATTCGACGAGAATTACAGAACAAGGCTGCTCAAATACTCTCTGGAGTCAAGCATCTTAACGGTTGCAAATATTGTTCTGGAAATTCCATGGTTCGCTATCCAACAATGAAATTCAGAGTTTCCTCATATGACCTCTACAGAAGAACTGCAATTATAGCTGAGGTTAATGATAAGGCTCCAAAGAAGAAATCTTTTGGTCTAGGATTGCCTGATGATTATTGGGATATTATTCCTGTAGATGCTCAACAAGAAGAAAGTTGTATAAAATCAAATAGAAGGGTTTTATCACCTGCCCAGGTTTGCTCTTTGTTGACTGGTGTTGATCCAAACTTTATTGAAAAATTTGTTCCGCGGAAGGATTTGCTTTGTCTCAAGTACTTCCCAGTGACACCAAATTGCCATCGTGTGACAGAGTTTGCGCATGCATTTTGTAATGGAAGCCGGTTGAGTTTTGATGACAGGACCAGAAATTGCAAGAAATTGGTTGATTTCAGGGGTACAGCTAATGAGTTAAGTTCTCGTCTAAATCCTGATAAAACACCAAGTAATAATATTTTTGCCGATATTCAGAAAAGAAGAGTTGGTGAAAATGCTTGCAATTCATCTGGTTTGAGATGGATGAAAGACGTGGTTCTTGGAAAACGCAATAGTAGTTCATTCCGTACCGTGGTTGTCGGTGATCCAGACCTTGAGCTTAGTGAGATTGGATTACCTTGTCAGATTGCAGAAAGTTTGGAGGTTGGTGAACATGTGAACAGGCAGAATAGGGAAAAATTGTTTGATTGTTGTGAGTTACGCATGTTAGAGAAGGGACATATAAACATCTGCAGAAAGGGTAGTCCAATCAAATTGTTCAAAAAGGAAGACCTTAAGATAGGAGACATATTTTATAGGCCCCTTACTAATGGGGATATAGTGCTGATAAATAGGCCTCCTTCCATACATCAACATTCTATGATTGCCCTCTCAGTTAGGGTCCTTCCGATATCTAATGTGGTATCTATTAACCCAATCTGCTGTTCCCCACTGAGTGGGGATTTTGATGGTGATTGCCTTCATGGGTATATTCCACAGTCAGTTGGTGCCAGAGTTGAGCTTAATGAGCTGGTTACTTTAGATAGGCAATTGATTAATGGGCAAAGTGGTGGAAATCTGCTTTCACTTTCTCAGGATAGTTTAACTGCTGCTTACTTGCTGATGGAAGATGGGGTTCTTTTGAATGTTTATGAAATGCAGCAGCTTCAAATGTTTTGCCCTTACAAGCTAACACTTCCTGCCGTTGTAAAGGCTCCTTCAAGTAATTCCTCATTTTGGTGTGGCAAGCAATTGTTTAGCATGCTCTTGCCTTCAAAATTTGACTACTCTTTTCCTTCAGATGGTGTTTTTGTTAGAGATGGGGAGCTTATATCTTCCTCTGAAGCTTCTGGATGGTTACGCGATTCTGACTGCAATGTTTTCCAGAGTCTTGTGGAACATTTTAAAGGGAAAACTCTAGACTTTTTGTATGCTGCACAGAAAGCTCTGTGTGAGTGGTTGACTATGACGGGTTTTAGTGTTTCCTTGTCAGACTTGTACCTCTCTTCCGACTCCTATGCACGAAAAAATATGATGGAGGAAATTGCCTATGGCTTACAGGAAGCAGAAGAGTCATGTAACTTCAAACAGTTATTAGTGGATGATTATTGTGATTTTATTTCAGGAAATCTTCAAGATATTACTGTTAAAGTGGATCGTCTGAATCATGAAAGGCAAATATCCCTTTCTCTGTGTCAAGTGTCCGTTGATGCTTTTAGACAGGTTTTTCGAAATATTCAAAGTTTAGCTGATAAATATGCATGCAAGAACAATACTTTCCTTGCTATGTTCAAGGCTGGAAGCAAGGGTAATTCACAGAAACTAGTGCAACATTCCATGTGTCTTGGCCTGCAGCATTCTCTGGTTCGTTTGTCTTACAGAATTCCCCGTCAACTCTCTTGTGCTGCTTGGAATAGACAAAAGAAGCTTGATTCAACCAAGAGGTTTTTCGGAACTCCTCAATCTGTTCAGTGTTACATTCCTTATGCTGTGGTTGAAAACTCTTTTATGACCGGGCTGAATCCACTTGAATGTTTTGTTCATTCAGTGGCAAACCGTGATAGCTCTTTCAGTGACAATGCAGATCTTCCTGGAACACTGACACGTAGACTTATGTTTTTTATGCGTGATTTATATGATGCATATGATGGAACAGTGAGAAACTTATATGGTAATCAAGTTATTCAATTTGCTTATGATACTGACAAGGACTCATCTTCTGATAGCTGTTACCAAGAACATACCATGGATTGTGAACCAGTTGGAGCCCTTTCTGCTTGTGCAATTTCTGAGGCTGCATACAGTGTTTTGGGTCAGCCAATCAGTCTGCTAGAAGCATCACCTCTGTTAAATTTAAAAAGTGTTTTAGAATGTGGTTCAAAGAAAAAAGGTGGTGATCAGACTGTGTCATTATTCTTGTCCCAGAAACTTGCTAAACAGAGAAATGGGTTTGAGTATGCAGCCTTGGAAATTAAGAATTATTTGGAAAGGATGATGTTCTCAGAAATTGTTTCTACGGTAATGATAATATTCACCCCACAGTCTTGCAGCCAAGAAAAGTATAGTCCTTGGGTTTGCCATTTCCATCTAGACAGGGAAATTGTCAAGAGAAGAAAGTTAAAAATGCATTCTATCATTGACTTTCTTTACCAGAGATGTGACTCACTAAGAAAAGAGTCAAAAGTCACTTTCCCCAATTTGATAATATCAAGCAAGAAGTGTTCTGCAAATAAAGGGAAGGAGGGAGAAGATTGTGTCACTGTTACAATTGTTGAAAACTCTGGGGATTCTGTACAAGAGGATGCTGTTCGGCAGTTGATGTTACCTTTGCTTCTTGGAATAGCTATAAAAGGATTTCTGGACATCACAAAGGTTGATATTCTCTGGAGTAATCTGTCGAAAGCATCAAATTCTAGTAATGGTTCTTTAGGTGGTGAACTGTACTTGAAAGTTACTATCTCCAGTGGCGCTGGCAGTGGTAGGTTCTGGGGATTTCTCATAAACCATTGTCACAAGATAATGCATATGATTGACTGGACACGAAGTCATCCCGATAATATTCATCATTTCTGCTCAGCCTATGGAATAAATGCAGGCTGGCAATATTTTCTCGGCAGTTTGGCATCTGCTACGTCTGCTACTGGCAAGACAATCCTTCCGAAGCATCTGCGTCTTGTTGCCAATAGTCTGTCAGCTACTGGGGAGTTTGTAGGGTTAAATGCTAAAGGCATGAAACGGCAAAGACAACATGCATCTGTTTCGTCACCCTTTGTGCAAGCATGCTTTTCTAATCCAGGTGGTTGTTTTATAAATGCTGCTAAGTGCAGAGTCAAGGACAACCTCCAGGGCAGCATAGATGCATTGGCTTGGGGGAACTGTCCGTCCATAGGGACAAGTGGACAATTTGATATCTTATATGCAGATAAGGGACAAGAGATTGACAAATCTGTAGATGTGTATAACCTACTTGAAGCAAGTATTAACCAACTGAATGAAAAGATTGATACCCCTGATGCTCACAACTATTCATTTGACAAATGCGGCTCTGGGTATAAATACAAAGACGGTGATAATACCTTGAAACGGTTTAAGCAGGTGAAAAGCAATATAAGAAATTTTGTGACTGTAAAGGATATTCAGAAGCTTACTTATGCATCAAGGTCCATATTGAACAATTATTTGATTGATCAGCAACTAAGTGACAGGGACTTGTCAACTATGCTGAGGGTTTTGCATTTTCACCCGCATAAAGATGAGAAGTTTGGTGCTGGACCACAGGGCATAAAGGTTGGGCATCATCCAATATATAAGGATACCCGCTGCTTCTTCATAGAACGAACTGATGGAAGTGTTGAAGATTTTTCGTACCGCAAGTGCATTCTTGGTGCTCTTGAGATTGTTGACCCTGAAAAGGCAAAGAGCCAGAAGAAAAGATGGTCGGGTGATAATGCTGAAAAGGCAAAGAGCCAGAAGAAAAGTTGTTGGGAAGATATCGCGTAA 4533 0.3975 AAGNFLPSARLLSSMEDDLFQEQKLPHGLIKAIKLDVLNEADIVKYILLCISISAFELVKFIVAIAMELDQMACTHCDKIAALEINAAGQVNCSDLGLPNLSSECTTCGGKSSVKNSCEGHYGVIKFPFVILHPYFMSEIAQILNKICPGCKSIRRELQNKAAQILSGVKHLNGCKYCSGNSMVRYPTMKFRVSSYDLYRRTAIIAEVNDKAPKKKSFGLGLPDDYWDIIPVDAQQEESCIKSNRRVLSPAQVCSLLTGVDPNFIEKFVPRKDLLCLKYFPVTPNCHRVTEFAHAFCNGSRLSFDDRTRNCKKLVDFRGTANELSSRLNPDKTPSNNIFADIQKRRVGENACNSSGLRWMKDVVLGKRNSSSFRTVVVGDPDLELSEIGLPCQIAESLEVGEHVNRQNREKLFDCCELRMLEKGHINICRKGSPIKLFKKEDLKIGDIFYRPLTNGDIVLINRPPSIHQHSMIALSVRVLPISNVVSINPICCSPLSGDFDGDCLHGYIPQSVGARVELNELVTLDRQLINGQSGGNLLSLSQDSLTAAYLLMEDGVLLNVYEMQQLQMFCPYKLTLPAVVKAPSSNSSFWCGKQLFSMLLPSKFDYSFPSDGVFVRDGELISSSEASGWLRDSDCNVFQSLVEHFKGKTLDFLYAAQKALCEWLTMTGFSVSLSDLYLSSDSYARKNMMEEIAYGLQEAEESCNFKQLLVDDYCDFISGNLQDITVKVDRLNHERQISLSLCQVSVDAFRQVFRNIQSLADKYACKNNTFLAMFKAGSKGNSQKLVQHSMCLGLQHSLVRLSYRIPRQLSCAAWNRQKKLDSTKRFFGTPQSVQCYIPYAVVENSFMTGLNPLECFVHSVANRDSSFSDNADLPGTLTRRLMFFMRDLYDAYDGTVRNLYGNQVIQFAYDTDKDSSSDSCYQEHTMDCEPVGALSACAISEAAYSVLGQPISLLEASPLLNLKSVLECGSKKKGGDQTVSLFLSQKLAKQRNGFEYAALEIKNYLERMMFSEIVSTVMIIFTPQSCSQEKYSPWVCHFHLDREIVKRRKLKMHSIIDFLYQRCDSLRKESKVTFPNLIISSKKCSANKGKEGEDCVTVTIVENSGDSVQEDAVRQLMLPLLLGIAIKGFLDITKVDILWSNLSKASNSSNGSLGGELYLKVTISSGAGSGRFWGFLINHCHKIMHMIDWTRSHPDNIHHFCSAYGINAGWQYFLGSLASATSATGKTILPKHLRLVANSLSATGEFVGLNAKGMKRQRQHASVSSPFVQACFSNPGGCFINAAKCRVKDNLQGSIDALAWGNCPSIGTSGQFDILYADKGQEIDKSVDVYNLLEASINQLNEKIDTPDAHNYSFDKCGSGYKYKDGDNTLKRFKQVKSNIRNFVTVKDIQKLTYASRSILNNYLIDQQLSDRDLSTMLRVLHFHPHKDEKFGAGPQGIKVGHHPIYKDTRCFFIERTDGSVEDFSYRKCILGALEIVDPEKAKSQKKRWSGDNAEKAKSQKKSCWEDIA 1510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0351 1510 SMART rpolaneu7 273 553 IPR006592 GO:0003677|GO:0003899|GO:0006351
Lal16g0351 1510 MobiDBLite consensus disorder prediction 1481 1510 - -
Lal16g0351 1510 Gene3D - 362 532 - -
Lal16g0351 1510 Gene3D RNA polymerase ii 399 451 - -
Lal16g0351 1510 Pfam RNA polymerase Rpb1, domain 2 366 524 IPR000722 GO:0003677|GO:0003899|GO:0006351
Lal16g0351 1510 Gene3D - 1373 1473 - -
Lal16g0351 1510 Pfam RNA polymerase Rpb1, domain 4 754 800 IPR007083 GO:0003677|GO:0003899|GO:0006351
Lal16g0351 1510 Gene3D RNA polymerase Rpb1, domain 3 533 679 IPR042102 -
Lal16g0351 1510 Pfam Protein of unknown function (DUF3223) 1399 1471 - -
Lal16g0351 1510 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 87 1317 - -
Lal16g0351 1510 CDD RNAP_IV_RPD1_N 78 898 IPR040403 -
Lal16g0351 1510 PANTHER DNA-DIRECTED RNA POLYMERASE 15 1384 IPR045867 GO:0003899|GO:0006351
Lal16g0351 1510 Gene3D - 681 851 IPR038120 -
Lal16g0351 1510 Pfam RNA polymerase Rpb1, domain 3 529 677 IPR007066 GO:0003677|GO:0003899|GO:0006351
Lal16g0351 1510 Gene3D RNA polymerase II, clamp domain 22 169 IPR044893 -
Lal16g0351 1510 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 15 1384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0351 Lal-Chr16 2122474 2133639 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0351 K16250 - gmx:100796185 2070.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0351 16 2122474 2133639 Lal16g0351 16 2122474 2133639 ECH