Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0347 ATGGACAAAGATTCATCTCATAATCATTCTCTTCATTCTTCTTCTTCTTCCTCTAACCGTTTGAAGCGTTTACTCAACTCCGATCACTACACGTCACCTTCCAAATCTTTATGTTCCGATAGGTTCATACCTTGTAGATCCACTTCCAAATTTTCCTTATTTGATATACCACCACCCTCTAAAAAAGAAACCTCCACCGCTTATAACTCCCTTCTCCGAACGGCGTTATTTGGACCCAATGCTCCCGTTACGCCTGATAAACCGTCCTCCGGTAATATTTTCCGTTACAAAACGGAGACTCGTCAGAACATGCATACCCTCTCACCATTTCTCGTCCATGATGATGATCTGCGTCATGACACTAATTACAGTTATACCCCTGTTGCTAAGCCTAACAGAAAGATTCCCAAATCTCCTTTCAAGGTTCTGGATGCACCTGCTTTGCAAGATGATTTTTATCTTAATCTTGTCGATTGGTCTTCCCAGGATGTTATGGCTGTAGGTCTGGGTAGCTGTATTTATTTATGGAATGCTTCTAACAGCAAGGTAACTACATTATGTGATTTGGGGATTGATGACTATGTTTGTTCAGTTGAATGGGCTCATCATGGTACATACATTGCTGTTGGAACTAGCAAGGGTAAAGTGAAGATTTGGGATGCATCTCAATGCAAGACGGTAAGAACGATGGAGGGTCATCGACTACGGGTTGGAGCCTTGGCCTGGAGTTCATCTATATTGTCTTCTGGTGGTCGGGATAAGAGTATTTTTCAACGAGATATACGTGCCAAGGACAATTTTATCAGTAAAATGTCAGGGCACAAGTCAGAGATTTGTGGACTGAAGTGGTCTTATGATAATCGTGAGCTAGCATCTGGAGGAAATGACAATAAATTGCTTGTTTGGAATCAACACTCAACCCAGCCTGTCCTGAAGTATTGTGATCATACAGCGGCTGTTAAAGCTATTGCATGGTCTCCTCATGCTAATGGACTTCTTGCATCTGGGGGAGGAACTGCAGACCGGTGTATTCGTTTCTGGAATACAACCACAGACTCTCGCTTAAGCTGTATGGACACCGGAAGTCAGGTTTGCAATCTTGTCTGGTCAAAAAATGTCAATGAACTGGTAAGCACACATGGCTACTCCCAGAACCAGATAGTAGTTTGGAAATACCCATCCATGTCAAAGGTACCCATAATAACTGCTGTGCTGACAACTCTTATGGGCCATACTTACAGAGTTCTTTATCTCGCCATCTCTCCTGATGGACAGACTATTGTCACTGGAGCTGGAGATGAAACACTTAGGTTTTGGAATGTATTTCCATCCCAAAAATCACAGAATACTGACAGGGAAATTGGAGCATTTTCTCATGGAAGAACTACTATTAGGTGA 1398 0.4249 MDKDSSHNHSLHSSSSSSNRLKRLLNSDHYTSPSKSLCSDRFIPCRSTSKFSLFDIPPPSKKETSTAYNSLLRTALFGPNAPVTPDKPSSGNIFRYKTETRQNMHTLSPFLVHDDDLRHDTNYSYTPVAKPNRKIPKSPFKVLDAPALQDDFYLNLVDWSSQDVMAVGLGSCIYLWNASNSKVTTLCDLGIDDYVCSVEWAHHGTYIAVGTSKGKVKIWDASQCKTVRTMEGHRLRVGALAWSSSILSSGGRDKSIFQRDIRAKDNFISKMSGHKSEICGLKWSYDNRELASGGNDNKLLVWNQHSTQPVLKYCDHTAAVKAIAWSPHANGLLASGGGTADRCIRFWNTTTDSRLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIVVWKYPSMSKVPIITAVLTTLMGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSQKSQNTDREIGAFSHGRTTIR 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0347 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 312 IPR001680 GO:0005515
Lal16g0347 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 195 229 IPR001680 GO:0005515
Lal16g0347 465 PANTHER PROTEIN FIZZY-RELATED 1 15 465 - -
Lal16g0347 465 MobiDBLite consensus disorder prediction 1 20 - -
Lal16g0347 465 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 15 465 IPR033010 GO:0010997|GO:0097027|GO:1904668
Lal16g0347 465 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 408 441 - -
Lal16g0347 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 408 449 IPR001680 GO:0005515
Lal16g0347 465 Pfam Anaphase-promoting complex subunit 4 WD40 domain 182 244 IPR024977 -
Lal16g0347 465 SMART WD40_4 401 440 IPR001680 GO:0005515
Lal16g0347 465 SMART WD40_4 264 303 IPR001680 GO:0005515
Lal16g0347 465 SMART WD40_4 223 260 IPR001680 GO:0005515
Lal16g0347 465 SMART WD40_4 179 220 IPR001680 GO:0005515
Lal16g0347 465 SMART WD40_4 306 348 IPR001680 GO:0005515
Lal16g0347 465 Gene3D - 129 444 IPR015943 GO:0005515
Lal16g0347 465 SUPERFAMILY WD40 repeat-like 130 440 IPR036322 GO:0005515
Lal16g0347 465 Pfam WD domain, G-beta repeat 308 348 IPR001680 GO:0005515
Lal16g0347 465 Pfam WD domain, G-beta repeat 269 303 IPR001680 GO:0005515
Lal16g0347 465 Pfam WD domain, G-beta repeat 405 440 IPR001680 GO:0005515
Lal16g0347 465 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 303 - -
Lal16g0347 465 ProSitePatterns Trp-Asp (WD) repeats signature. 427 441 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0347 Lal-Chr16 2104981 2110783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0347 288 441 Miscellaneous Gene Families AT5G08390 22.078 5.09e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0347 K03364 - gmx:100780928 695.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0347 16 2104981 2110783 Lal16g0347 16 2104981 2110783 ECH