Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0300 ATGTACAGTCACAGAGACAGAGATAAAAGAGCTTTTCCCTCCAAATCGGAGTTAGATCGTAAACGAATCACCGATCTTCTTGATCGATCCTCACCGTCCACATCCAAGGCTATCAACGGTGGCTATGATAGGTCCTCCGCTAAGTCTTCTTCTCACACTAACAGGGACTCTCGCTCTTCCTCCAACCCTATGTCCAAATATTCCAACGCAGAACATGAGGAATCTGAAACAGATAACGAGGAGTCAGATGGTAGAGGTTCGGATGGAGATGACACGTCATGGATATCTTGGTTTTGCAATTTGAGAGGGAATGAATTCTTTTGTGAGGTTGATGATGATTACATACAAGATGATTTTAACTTATGTGGATTAAGCAGCCAAGTTCCTTACTATGATTATGCCCTTGATTTAATTTTGGATGTTGAATCCTCCCATGGTGACATGTTTACAGAGGAACAGAATGAGTTAATTGAATCAGCCGCGGAGATGCTTTATGGTCTCATTCATGCTCGGTTCATATTGACAAGCAAAGGAATGGCTGCGATGCTGGACAAGTATAAGAACTATGATTTTGGCAGATGCCCAAGAGTTTACTGCTCTGGACAACCCTGCCTTCCAGTGGGTCAGTCAGATATTGCTCGGTCAAGTACTGTGAAAATATATTGCCCAAGGTGTGAAGACATTTACTATCCTCGCTCCAAGTATCAAGGCAATATTGATGGTGCTTACTTCGGAACTACTTTTCCCCACCTCTTCCTGATGACTTATGGACAACTGAAGCCACAGAAACCATCACAGAACTATGTTCCGAGAGTCTTTGGCTACAAACTTCACAAACCACATAGCTGA 849 0.4299 MYSHRDRDKRAFPSKSELDRKRITDLLDRSSPSTSKAINGGYDRSSAKSSSHTNRDSRSSSNPMSKYSNAEHEESETDNEESDGRGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARFILTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIARSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQNYVPRVFGYKLHKPHS 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0300 282 Gene3D - 191 265 - -
Lal16g0300 282 MobiDBLite consensus disorder prediction 1 89 - -
Lal16g0300 282 PRINTS Casein kinase II regulatory subunit family signature 93 109 IPR000704 GO:0005956|GO:0019887
Lal16g0300 282 PRINTS Casein kinase II regulatory subunit family signature 110 124 IPR000704 GO:0005956|GO:0019887
Lal16g0300 282 PRINTS Casein kinase II regulatory subunit family signature 165 186 IPR000704 GO:0005956|GO:0019887
Lal16g0300 282 PRINTS Casein kinase II regulatory subunit family signature 190 211 IPR000704 GO:0005956|GO:0019887
Lal16g0300 282 PRINTS Casein kinase II regulatory subunit family signature 212 233 IPR000704 GO:0005956|GO:0019887
Lal16g0300 282 PRINTS Casein kinase II regulatory subunit family signature 240 257 IPR000704 GO:0005956|GO:0019887
Lal16g0300 282 PANTHER CASEIN KINASE II SUBUNIT BETA-2 5 279 - -
Lal16g0300 282 ProSitePatterns Casein kinase II regulatory subunit signature. 194 225 IPR000704 GO:0005956|GO:0019887
Lal16g0300 282 SMART CK_II_beta_2 93 276 IPR000704 GO:0005956|GO:0019887
Lal16g0300 282 MobiDBLite consensus disorder prediction 1 27 - -
Lal16g0300 282 MobiDBLite consensus disorder prediction 28 68 - -
Lal16g0300 282 Pfam Casein kinase II regulatory subunit 93 276 IPR000704 GO:0005956|GO:0019887
Lal16g0300 282 PANTHER CASEIN KINASE II SUBUNIT BETA 5 279 IPR000704 GO:0005956|GO:0019887
Lal16g0300 282 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 86 190 IPR016149 GO:0005956|GO:0019887
Lal16g0300 282 SUPERFAMILY Casein kinase II beta subunit 91 280 IPR035991 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0300 Lal-Chr16 1817347 1820228 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0300 K03115 - gmx:100780095 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0300 16 1817347 1820228 Lal16g0300 16 1817347 1820228 ECH