Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0296 ATGGCGGAATCAGTGGAGCTTCCGAGTCGTTTAGCGATTCTTCCATTCAGGAATAAGGTTCTATTACCAGGTGCCATCATCAGAATTCGTTGCACTTCCCCAACTAGTGTGAAATTGGTGGAACAAGAACTTTGGCAGAGAGAAGAGAAGGGGTTAATTGGCATCTTGCCGGTGCTTGATGCTGTAGAAATTAAGCCAGTGGGTCACTCTATATCCCAAGGTGTAGGTACTGACTCTCTAGACCAAACCTCAAAACCTCAAGGTGGTTCATCAGATTCTCATAAACCTGATACAGAAAATCAGAATGACGTTCATTGGCATAGCAGAGGGGTAGCTGCTCGGGCATTACATTTATCGAGGGGAGTGGAGAAGCCAAGTGGGAGGGTCACATATGTAGTTGTTCTTGAAGGTTTGTGCAGATTTAGTGTCCAGGAACTAATCACAAGGGGAACATACCATACTGCAAGGATCTCTTCTCTTGAGATGATGAAGACTGAGATGGAACGTGTGGAGCAAGACCCGGATTTCATATTGTTATCTCGCCAATTCAAATCAACTGCCATGGAGCTGATTTCTGAACTTGAGCAGAAACAAAAAACTGGTGGAAGGACAAAAGTTCTCTTGGAGACTGTTCCAGTTCACAAATTAGCTGATATTTTTGTTGCTAGCTTTGAGATAAGTTTTGAAGAACAGCTATGTATGTTGGATTCAGTCGACCTTAAAGTGAGGCTTTCAAAGGCAACTGAAATGGTTGATAGGCACTTACAGTCAATACGTGTAGCTGATAAAATTACACAGAAGGTTGAAGGACAGTTGTCAAAATCTCAAAAAGAGTTTCTTCTGCGCCAGCAGATGAGAGCTATAAAAGAAGAACTTGGTGATAATGATGATGATGAGGATGACCTGGCTGCCCTGGAAAGAAAGATGCATAGTGCGGGAATGCCACAGGATATTTGGAAGCTTGCACACAGAGAATTAAGGAGACTAAAAAAAATGCAGCCTCAGCAACCTGGCTATAGCAGTTCACGGGCTTACCTGGATCTTCTTGCTGATATGCCATGGCAGAAGGCCAGCAAAGAGCGTGAGCTGGACTTAAGAGCTGCACAGGAGCGCCTAGACAATGACCACTATGGTTTAGTGAAGGTCAAGCAACGAATAATTGAATACCTGGCTGTTCGCAAGCTTAAGCCAGATGCAAGGGGCCCTGTGTTGTGCTTTGTTGGACCACCAGGTGTTGGTAAAACATCGTTGGCGTCTTCCATTGCTGCTGCTTTGGGCAGAAAGTTTGTGCGCATATCCCTTGGTGGTGTCAAGGATGAGGCTGATATTAGAGGGCACAGGAGAACATACATTGGAAGCATGCCTGGGAGGCTTATAGACGGACTAAAGAGAGTAGGTGTTTCCGATCCTGTCATGTTGCTTGATGAAATTGACAAGACAGGTTCTGATGTTCGTGGAGATCCAGCTTCAGCATTGCTGGAGGTTCTAGATCCAGAACAAAATAAAACATTCAATGATCAGGTTATATTTTTGGCTACAGCAAATAGGGCGCAGCCTATTCCTCCACCGCTCCTTGACAGGATGGAGGTCATCGAGCTTCCGGGATATACATCTGAGGAAAAGCTCAATATAGCCATGCGGCATTTGATTCCAAGAGTTTTGGACCAACACGGGTTGAGTTCCGAGTTTCTTCAGATTCCAGAGGGGATGGTGAAACTTGTTATTCAAAGATACACCAGGGAAGCTGGAGTTCGAAATTTGGAGAGGAATTTAGCTGCCCTGGCTCGTGCTGCTGCAGTACGAGTAGCAGAGCAAGAACAAGTAGTTCCATTGAACAAAGGGATGCAGGAACTTGCTACATCACTTCTGGAAAACAGACTTCCAAATGATGCTGAAGTTGAAATGGAAGTGATACCGATGGGTGTCAACAATCGTGACATTTCAAACACATTCAAGATCACCTCTCCAGTGCTTGTTGATGAAGCTATGCTTAAAAAAGTGCTTGGGCCCCCAAAGTTTGATAGCAAAGAAGCTGAAGAACGTGTTGTAAGCCCTGGGGTATCTGTTGGGTTGGTTTGGACTACTTTTGGTGGAGAAGTTCAATTTGTGGAGGCTACCGCAATGGTGGGGAAGGGTGAATTGCATCTTACTGGACAACTTGGTGATGTAATAAAAGAATCGGCTCAAATTGCACTAACATGGGTAAGGACAAGAGCAGCTGATCTTAAGTTGGCTACTGCGGAGGGCATTAATCTGTTGGAGGGCCGTGATGTACATATTCATTTTCCTGCAGGTGCTGTACCTAAAGATGGGCCTTCAGCTGGTGTGACTTTGGTCACAGCATTGGTATCACTTTTCAGTCAGAAAATAGTGAGATCAGATACAGCCATGACTGGAGAAATGACATTGAGGGGTCTTGTACTACCTGTTGGTGGTATCAAGGATAAGATATTAGCTGCACATCGACATGGCATTAAGAGAGTAATCCTACCTGAAAGGAACTTGAAGGACTTGGTTGAAGTACCATCATCAGTGCTGGCCGATTTGGAGATAGTGCTTGCAAAACGAATGGAAGATGTGTTAGAGGAAGCTTTTGAAGGTGGGTGCCCTTGGAGACAACACTCAAATTTGTAA 2634 0.4472 MAESVELPSRLAILPFRNKVLLPGAIIRIRCTSPTSVKLVEQELWQREEKGLIGILPVLDAVEIKPVGHSISQGVGTDSLDQTSKPQGGSSDSHKPDTENQNDVHWHSRGVAARALHLSRGVEKPSGRVTYVVVLEGLCRFSVQELITRGTYHTARISSLEMMKTEMERVEQDPDFILLSRQFKSTAMELISELEQKQKTGGRTKVLLETVPVHKLADIFVASFEISFEEQLCMLDSVDLKVRLSKATEMVDRHLQSIRVADKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNDDDEDDLAALERKMHSAGMPQDIWKLAHRELRRLKKMQPQQPGYSSSRAYLDLLADMPWQKASKERELDLRAAQERLDNDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVSDPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDQVIFLATANRAQPIPPPLLDRMEVIELPGYTSEEKLNIAMRHLIPRVLDQHGLSSEFLQIPEGMVKLVIQRYTREAGVRNLERNLAALARAAAVRVAEQEQVVPLNKGMQELATSLLENRLPNDAEVEMEVIPMGVNNRDISNTFKITSPVLVDEAMLKKVLGPPKFDSKEAEERVVSPGVSVGLVWTTFGGEVQFVEATAMVGKGELHLTGQLGDVIKESAQIALTWVRTRAADLKLATAEGINLLEGRDVHIHFPAGAVPKDGPSAGVTLVTALVSLFSQKIVRSDTAMTGEMTLRGLVLPVGGIKDKILAAHRHGIKRVILPERNLKDLVEVPSSVLADLEIVLAKRMEDVLEEAFEGGCPWRQHSNL 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0296 877 Gene3D - 684 870 IPR014721 -
Lal16g0296 877 MobiDBLite consensus disorder prediction 73 105 - -
Lal16g0296 877 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 3 877 IPR027501 GO:0004252|GO:0006515
Lal16g0296 877 MobiDBLite consensus disorder prediction 73 95 - -
Lal16g0296 877 CDD AAA 385 536 - -
Lal16g0296 877 Gene3D - 365 533 IPR027417 -
Lal16g0296 877 Gene3D - 534 673 - -
Lal16g0296 877 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 408 427 - -
Lal16g0296 877 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 685 701 - -
Lal16g0296 877 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 767 786 - -
Lal16g0296 877 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 797 816 - -
Lal16g0296 877 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 820 838 - -
Lal16g0296 877 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 770 778 IPR008268 GO:0004176|GO:0004252|GO:0006508
Lal16g0296 877 SUPERFAMILY Ribosomal protein S5 domain 2-like 685 864 IPR020568 -
Lal16g0296 877 Pfam Lon protease (S16) C-terminal proteolytic domain 659 865 IPR008269 GO:0004176|GO:0004252|GO:0006508
Lal16g0296 877 Gene3D - 304 352 - -
Lal16g0296 877 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 1 877 - -
Lal16g0296 877 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 1 877 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Lal16g0296 877 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 608 IPR027417 -
Lal16g0296 877 ProSiteProfiles Lon proteolytic domain profile. 682 867 IPR008269 GO:0004176|GO:0004252|GO:0006508
Lal16g0296 877 TIGRFAM lon: endopeptidase La 13 865 IPR004815 GO:0004176|GO:0005524|GO:0006508
Lal16g0296 877 PIRSF Lon_proteas 1 627 IPR004815 GO:0004176|GO:0005524|GO:0006508
Lal16g0296 877 PIRSF Lon_proteas 640 868 IPR004815 GO:0004176|GO:0005524|GO:0006508
Lal16g0296 877 SMART lon_5 10 253 IPR003111 -
Lal16g0296 877 Pfam ATPase family associated with various cellular activities (AAA) 404 531 IPR003959 GO:0005524|GO:0016887
Lal16g0296 877 ProSiteProfiles Lon N-terminal domain profile. 11 253 IPR003111 -
Lal16g0296 877 Gene3D - 1 161 IPR046336 -
Lal16g0296 877 SMART AAA_5 400 535 IPR003593 -
Lal16g0296 877 Coils Coil 288 308 - -
Lal16g0296 877 Pfam ATP-dependent protease La (LON) substrate-binding domain 11 253 IPR003111 -
Lal16g0296 877 Gene3D - 162 296 - -
Lal16g0296 877 SUPERFAMILY PUA domain-like 10 252 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0296 Lal-Chr16 1781745 1792614 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0296 K01338 - gmx:100796650 1492.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0296 16 1781745 1792614 Lal16g0296 16 1781745 1792614 ECH