Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0293 ATGCGCGCTTCCATTTTCAGACGCTTCCCTTTTTCTCCTTCTTCCAATGTCTCTTCCAATCTTCACTCTCAGTCCTTCAAAACTTCCTTCTCAAATCCCATAATCAATTACCCAAATTCCAGTTCCACTTGCAATGACTCTCTGCTCCTCCACTTTCTATCCATGGGTTTGCACCATGAGGCTCAAAAGCTTCTTCACAAATTCTCCAAAGGAAGAGACCTCTATGGACGTGTTGTTTGCTGGACTTCCTTGCTCACTAAGTATTCTCGCGATGGTTTCATTGATGAGGCTCGAATGCTGTTCGATATAATGCCTCACAGAAATATTGTTACTTGGAACTCCATGCTATCGGGTTACCTGCATTCTGGCATGCTCAATGAGGCTTCTTGGTTTTTTGAGACCATGCCGGAGAGGAACGTTGTTTCTTGGACTGCATTGCTTAGTGGGTTAGCAGATGCGGGCAGGATCGAAGATGCAAGAAGAGTGTTTGATGAAATGCCGGAGAAGAATGTGGTTTCTTGGAATTCCATGGTGGCGGGGTTAATTAGGAATGGAGATTTGGGTGAAGCGAGGATGGTTTTTGAACAGATCCCGGATAAAAATGTGGCTTCTTGGAATGCTATGATTGCGGGTTACGTTGAAAATGGTAGGATGGATGAAGCAAGAGTCTTGTTTGATGAGATGAAATATAGGAATGTGATTACTTGGACTAGCATGATATCTGGTTATTGTCGTGAGAGTAGTGTGGAAGAGGCTTATTGTTTGTTCAGGAAAATGCCGGAGAAAAATGTTGTTTCTTGGACAGCCATGATTGGTGGGTTCACCTGGAATAGCTTGTTTCAAGAGGCATTATTGCTTTTCCTCGAGATGAGACTTTCTGGTGCAAAACCAAATGGGGAGACCTTTATCTCTATCATATATGCATGTGCTGGTTTGGGTTTTCCTTGTCTTGGGAAACAATTACATGCACAGTTAATTGTCAACAGCTGGAAGCTTGATGATTATGACTGTAGGTTAAGTAGAAGTCTCGTTCGGATGTACACTGCCTTTGGTCTTATGGACTATGCTCACAATATATTTGAAGGTGATCTGAGTAACTGTGATGATCAGTCTTTCAATTCTATGATAAATGGTTATGTTCAGGCTGGTCAGTTAGAAAGGGCTCAGGACTTGTTTGACAGAGTACCTATCCAAAATAAAATTGCATGGACTTGTATGGTTGCTGGCTATCTCAGTGCTGGGCAAGTATTGAAGGCATGCAATCTCTTTAATAAAATGCCTGACAGGGATTCCATTGCATGGACTTCAATGATTTATGGGTTTGTCCAAAATGAGTTGATTGCTGAAGCCATTGCCTTATTTGCAGACATGATGGGTCGTGGTGTTTCGCCTATTAGTTCTACATATGCTGTTCTTTTCGGAGCCATTGGTTCCATAGCATATCTTGATCAGGGGCGGCAATTGCATGGTATGCAGTTGAAGACAATATATGAATACGATTTGATTCTTGAGAATTCTCTAATTTCAATGTATGCAAAATGTGGGGAGATAGATGATGCATATAGAATATTCTCGTACATGACTTACCGGGATAAAATTTCTTGGAACACCATGATCATGGGCCTTTCAGATCATGGGAAGGCTAGTGAAAGTTTAAAGATGTATGAAACTATGATTGAATTTGGGATTTACCCAGATTCTGTTACTTTCCTTGGTGTCCTGACAGCATGTGCTCATTCAGGTCTTGTTGGTAAAGGGTGGGAGTTATTCAATACCATGGTCAATGATTATGCACTTCAACCTGGTCTACAACATTACATTAGTATGATCAATCTTCTTGGCCGAGCCGGGAAGGTGAGGGATGCAGAGGAGTTTGTCTTGAGGCTACCTATTGAGCCAAATCATGCCATTTGGGGAGCATTGGTTGGGGTGTGTGGATTGAGTAAAACTGATACAGGAGTAGCTAGGCGTGCAGCCGAACGACTGCTTGAGTTGGATCCTTTAAATGCACCAGGACACGTGGCCCTTTGTAACATACATGCCGCAAATGATAGACACACAGAGGAGACAAGTTTGAGAAAAGAAATGAGACTGAAAGGAGTGAGGAAGGTACCCGGGTGTAGTTGGATACTAGTGCAGGGGAGAGTTCATGTTTTCTTACCAGGAGATAAATTAGAACCACTAGTAAAAGATATGTTACTAGAAGTTTGA 2211 0.422 MRASIFRRFPFSPSSNVSSNLHSQSFKTSFSNPIINYPNSSSTCNDSLLLHFLSMGLHHEAQKLLHKFSKGRDLYGRVVCWTSLLTKYSRDGFIDEARMLFDIMPHRNIVTWNSMLSGYLHSGMLNEASWFFETMPERNVVSWTALLSGLADAGRIEDARRVFDEMPEKNVVSWNSMVAGLIRNGDLGEARMVFEQIPDKNVASWNAMIAGYVENGRMDEARVLFDEMKYRNVITWTSMISGYCRESSVEEAYCLFRKMPEKNVVSWTAMIGGFTWNSLFQEALLLFLEMRLSGAKPNGETFISIIYACAGLGFPCLGKQLHAQLIVNSWKLDDYDCRLSRSLVRMYTAFGLMDYAHNIFEGDLSNCDDQSFNSMINGYVQAGQLERAQDLFDRVPIQNKIAWTCMVAGYLSAGQVLKACNLFNKMPDRDSIAWTSMIYGFVQNELIAEAIALFADMMGRGVSPISSTYAVLFGAIGSIAYLDQGRQLHGMQLKTIYEYDLILENSLISMYAKCGEIDDAYRIFSYMTYRDKISWNTMIMGLSDHGKASESLKMYETMIEFGIYPDSVTFLGVLTACAHSGLVGKGWELFNTMVNDYALQPGLQHYISMINLLGRAGKVRDAEEFVLRLPIEPNHAIWGALVGVCGLSKTDTGVARRAAERLLELDPLNAPGHVALCNIHAANDRHTEETSLRKEMRLKGVRKVPGCSWILVQGRVHVFLPGDKLEPLVKDMLLEV 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0293 736 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 138 IPR002885 -
Lal16g0293 736 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Lal16g0293 736 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 464 IPR002885 -
Lal16g0293 736 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 265 723 - -
Lal16g0293 736 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 26 111 - -
Lal16g0293 736 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 198 265 - -
Lal16g0293 736 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 112 201 - -
Lal16g0293 736 TIGRFAM PPR: pentatricopeptide repeat domain 433 464 IPR002885 -
Lal16g0293 736 TIGRFAM PPR: pentatricopeptide repeat domain 110 140 IPR002885 -
Lal16g0293 736 TIGRFAM PPR: pentatricopeptide repeat domain 402 429 IPR002885 -
Lal16g0293 736 TIGRFAM PPR: pentatricopeptide repeat domain 234 265 IPR002885 -
Lal16g0293 736 TIGRFAM PPR: pentatricopeptide repeat domain 141 172 IPR002885 -
Lal16g0293 736 TIGRFAM PPR: pentatricopeptide repeat domain 371 394 IPR002885 -
Lal16g0293 736 TIGRFAM PPR: pentatricopeptide repeat domain 533 567 IPR002885 -
Lal16g0293 736 TIGRFAM PPR: pentatricopeptide repeat domain 172 201 IPR002885 -
Lal16g0293 736 TIGRFAM PPR: pentatricopeptide repeat domain 204 229 IPR002885 -
Lal16g0293 736 Gene3D Tetratricopeptide repeat domain 398 483 IPR011990 GO:0005515
Lal16g0293 736 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Lal16g0293 736 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 231 IPR002885 -
Lal16g0293 736 Pfam PPR repeat family 531 578 IPR002885 -
Lal16g0293 736 Pfam PPR repeat family 200 233 IPR002885 -
Lal16g0293 736 Pfam PPR repeat family 430 475 IPR002885 -
Lal16g0293 736 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Lal16g0293 736 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 26 111 - -
Lal16g0293 736 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 112 201 - -
Lal16g0293 736 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 265 723 - -
Lal16g0293 736 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 198 265 - -
Lal16g0293 736 Gene3D Tetratricopeptide repeat domain 279 397 IPR011990 GO:0005515
Lal16g0293 736 Gene3D Tetratricopeptide repeat domain 37 169 IPR011990 GO:0005515
Lal16g0293 736 Gene3D Tetratricopeptide repeat domain 170 278 IPR011990 GO:0005515
Lal16g0293 736 Gene3D Tetratricopeptide repeat domain 498 719 IPR011990 GO:0005515
Lal16g0293 736 Pfam PPR repeat 110 140 IPR002885 -
Lal16g0293 736 Pfam PPR repeat 234 264 IPR002885 -
Lal16g0293 736 Pfam PPR repeat 79 109 IPR002885 -
Lal16g0293 736 Pfam PPR repeat 141 171 IPR002885 -
Lal16g0293 736 Pfam PPR repeat 505 528 IPR002885 -
Lal16g0293 736 Pfam PPR repeat 371 394 IPR002885 -
Lal16g0293 736 Pfam PPR repeat 265 294 IPR002885 -
Lal16g0293 736 Pfam PPR repeat 606 626 IPR002885 -
Lal16g0293 736 Pfam PPR repeat 402 429 IPR002885 -
Lal16g0293 736 Pfam E motif 652 710 IPR046848 -
Lal16g0293 736 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 531 565 IPR002885 -
Lal16g0293 736 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 500 530 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0293 Lal-Chr16 1744492 1746702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0293 23 727 Glycoside Hydrolase AT3G49170 30.026 3.65e-91 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0293 - - gmx:102669560 1102.81