Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0079 ATGGCAAAGGAGTTGTTGAGTTTTAATAATGACACAACTTGTTCTTCTTGGAACTACTCTTCTACTAGACTCGCTTCTGGTTCCACCGATGGCTCACTTTCTATCTTCGATTTCATTCATCCTTCTTCTTCTTCTTCCCTCCGTTCTTCTTTCAATTCTAAGATCCATGAAGGACCTATCGTTAAGGTTGTTTGGGTTCCTCCAGAATATGGTGACGCAGTTGCATGTGTTACCGCCGACGGAATCGTTTCATTGTGGGAGGAGGTTGCCCATGATTCACAGCCTCTTCAATGGAAGAATTTCAAAATCTTTAGATGCGGTTTAAGCAAGGTCCTTGATGTTCAATTTGGATCTCTTACTACTTTGAAAATGGTTGCTGCATATTCAGATGGCCACGTGAGAGTTTATGAGCTTTTGGATCCCTTGGAGCTCAAAAACTGGCAGCTTCAGGCTGAGTTTCAGAATGTTGTTGAGTCAGTGTCTGCATTTGGAAAGGCTTTGTGCCTCTCTGCATCCATATCTTGGAATCCACAAAAAGGTGGAAGCCAGGAGCCCAACTTCATAATAGGTTTTAATTCAAATACAGCAGAGCTTAATTCTTCTAAGGTATGGGAATTTGATCAGGCTCATCAAAGATGGCTTCCAGTGGCAGAACTGGCACTGCCTGAGGACAAAGGTGATCAAGTTTATGCTGTTGCATGGGCACCAAACATTGGCAGATCTTATGAAACCATTGCGGTTGCAACCCACAAGGGACTTGGGATATGGAACCTTGGATTGAATCCTGATCATGATGGGAGACTTCCATTGGAGAGAGTTGCTTTGCTGTCGGGTCACGAAGGCATGGTGTGGCAAATGGAGTGGGATATGAGTGGAATGACCTTGGCTACTACAGGTCATGATGGAATGGTTCGACTATGGCAGTCGAACCTCAATGGTGTTTGGCATCAGCAGGCTGCGCTTGAACCTACTTCTTAG 978 0.4458 MAKELLSFNNDTTCSSWNYSSTRLASGSTDGSLSIFDFIHPSSSSSLRSSFNSKIHEGPIVKVVWVPPEYGDAVACVTADGIVSLWEEVAHDSQPLQWKNFKIFRCGLSKVLDVQFGSLTTLKMVAAYSDGHVRVYELLDPLELKNWQLQAEFQNVVESVSAFGKALCLSASISWNPQKGGSQEPNFIIGFNSNTAELNSSKVWEFDQAHQRWLPVAELALPEDKGDQVYAVAWAPNIGRSYETIAVATHKGLGIWNLGLNPDHDGRLPLERVALLSGHEGMVWQMEWDMSGMTLATTGHDGMVRLWQSNLNGVWHQQAALEPTS 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0079 325 Pfam WD domain, G-beta repeat 276 307 IPR001680 GO:0005515
Lal16g0079 325 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 308 - -
Lal16g0079 325 PANTHER NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER 11 324 IPR037363 GO:0005198
Lal16g0079 325 SUPERFAMILY WD40 repeat-like 9 308 IPR036322 GO:0005515
Lal16g0079 325 PANTHER NUCLEOPORIN SEH1 11 324 IPR037597 GO:1904263
Lal16g0079 325 SMART WD40_4 269 308 IPR001680 GO:0005515
Lal16g0079 325 SMART WD40_4 1 37 IPR001680 GO:0005515
Lal16g0079 325 SMART WD40_4 212 257 IPR001680 GO:0005515
Lal16g0079 325 SMART WD40_4 44 87 IPR001680 GO:0005515
Lal16g0079 325 SMART WD40_4 97 137 IPR001680 GO:0005515
Lal16g0079 325 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 308 IPR001680 GO:0005515
Lal16g0079 325 Gene3D - 9 323 IPR015943 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0079 K14299 - gmx:100780788 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0079 16 481871 484821 Lal16g0079 16 481871 484821 ECH