LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal15g1387	ATGGGTAACAGAAGACGGTTCACACAAGTTGCTACCAGCGACGATGAAGACGACAACGTTTCACCACTACGACGTCGTTCCAATCACCTTTCTTCTTCTTCTTCTTCTTCTTTTCGTTCCAATCGAAAGAGGATAAAGCTCTTTGATGATGATGAAGAAAAAGCAGAAACAGATCCTGAAGAACAACAACAACAACAAGAACAAGAGGAAAGAGAAGAAGAACCTGTTCAGGAAGATGCTAAACCAATTGGTGAACCGATTAGGGCTTCTGGTAAAGGAAGAGGACGAAGAAAGCACTTTCAATCATTCGAATTCGATGGAAATCACTATACTTTGCCATTTGGCTTGGCAATGGGCATTGCCTATGAGGAGGACCCAGTTCTTCTTGTGCCGGAGGATAAGGACCAAAAGCCCTATGTGGCAATTATTAAGGATATTGCACAGCTTTTAAGTGGCAGCATCATGGTTACAGGGCAGTGGTTTTATCGTCCTGAAGAAGCAGAAAGAAAAGGTGGTGGAAGCTGGCAATCACATGATACAAGGGAGCTGTTTTATAGTTTCCACCGTGATGAGGTTCCTGCAGAATCTGTCATGCATAAGTGTGTGGTGCATTTTGTTCCTATACACAAACAGCTCCCAAATCGTAAGCAAAATCCTGGGTTTATTGTGCAAAAGGTGTATGACACGGTAGAAAGGAAACTATGGAAGCTAACTGATAAGGACTATGAGGACGGTAAGCAACAAGAAATTGATGAGCTTGTTCAGAAAACCCTTCAACGTTTGGGTGATATACCTGACATTGAAGCTGAAGAAGCCCCTGCTGATCAGGAAGATCTAACAAAAAATAAAAGGATATTAAGGAAAAAAAGTATTTTACCTCTCGATGTTTCAAGGGAGGAGGATTCAATTCATAAGAGTGACCAACATCTGAAACCTGAAACACCGTGGAGTTGTGTAAATAATGCCTCGGAGCATTATCGCATATTAGTGGATCTCAATGCACTAACGGGAGATACTCACCGTGACAAAGGCTTGGAGAAGTTGCTTCAAAGCGTTCAATACATGTTTAATTGTGATGATCGCCTAAAGAATGAAAAAAAAGGAAATGACAATTCTGGTACAATCAACTCTGGAAGCAATAACAAAAGCTTAGAATTAGCGAATGAACATCAAGACAAGGGTCAGAAGAATTCCAAGTCTTTTGTCTGGCCAGATGCGGCTGTTCCAGCTGTAGTTGCTCTGGAAAAAGCTTCACATGATACTCTTTCATCGGATTATCAAAAGTATAACCAAAAGTTAAGGCAACTAGTATTTAATCTCAAGAACAATGCAGTGCTAGCACGTCGTCTATTAAATGGAGAGTTGGAACCTTCAAAAATATTAAATATGACCCCTAATGAATTGAAGGAGGGTTTGACTGCTGAGGAAATATCCAAGAATGAGCCTGATGAGTCACAGCATATACAGATGACCGATGCCCGCTGCTCAAGATGCATGGAGACTAAGGTGGGCTTGAGGGATATCATCCATGCAGGACATAATGATCGATATCAGCTTGAATGTATTGCCTGTGGTAATTCCTGGTATGCATCACGTGACGCGGTGTCTGTGCTTACCATAGATGGATCAGATTCAAGAAAAAGTGTAGGAACCGCGCCGTGGGCTACATCAAAATTTGAAGATGTAGAGAAGAAGAAGCTGGTGAGTCCCCGGGAACATGAAAAGTCTGGCAATGACATCTTTAAGAAGACAAGTGAAGCATATATGCCTGTTTTGGAAACCCAGAAATCATTTGGTAAGTCCAGGAAAGATGAAAATGTTGAAGCTAAGAGAAATGCTGACTAG	1845	0.4152	MGNRRRFTQVATSDDEDDNVSPLRRRSNHLSSSSSSSFRSNRKRIKLFDDDEEKAETDPEEQQQQQEQEEREEEPVQEDAKPIGEPIRASGKGRGRRKHFQSFEFDGNHYTLPFGLAMGIAYEEDPVLLVPEDKDQKPYVAIIKDIAQLLSGSIMVTGQWFYRPEEAERKGGGSWQSHDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQLPNRKQNPGFIVQKVYDTVERKLWKLTDKDYEDGKQQEIDELVQKTLQRLGDIPDIEAEEAPADQEDLTKNKRILRKKSILPLDVSREEDSIHKSDQHLKPETPWSCVNNASEHYRILVDLNALTGDTHRDKGLEKLLQSVQYMFNCDDRLKNEKKGNDNSGTINSGSNNKSLELANEHQDKGQKNSKSFVWPDAAVPAVVALEKASHDTLSSDYQKYNQKLRQLVFNLKNNAVLARRLLNGELEPSKILNMTPNELKEGLTAEEISKNEPDESQHIQMTDARCSRCMETKVGLRDIIHAGHNDRYQLECIACGNSWYASRDAVSVLTIDGSDSRKSVGTAPWATSKFEDVEKKKLVSPREHEKSGNDIFKKTSEAYMPVLETQKSFGKSRKDENVEAKRNAD	614

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal15g1387	614	Gene3D	-	41	227	IPR043151	-
	Lal15g1387	614	ProSiteProfiles	BAH domain profile.	119	238	IPR001025	GO:0003682
	Lal15g1387	614	SMART	BAH_4	119	238	IPR001025	GO:0003682
	Lal15g1387	614	MobiDBLite	consensus disorder prediction	597	614	-	-
	Lal15g1387	614	MobiDBLite	consensus disorder prediction	9	24	-	-
	Lal15g1387	614	ProSiteProfiles	TFIIS central domain profile.	340	496	IPR003618	GO:0006351
	Lal15g1387	614	Pfam	Transcription factor S-II (TFIIS), central domain	336	486	IPR003618	GO:0006351
	Lal15g1387	614	Pfam	BAH domain	124	236	IPR001025	GO:0003682
	Lal15g1387	614	CDD	BAH_plant_3	90	247	-	-
	Lal15g1387	614	MobiDBLite	consensus disorder prediction	1	96	-	-
	Lal15g1387	614	MobiDBLite	consensus disorder prediction	53	74	-	-
	Lal15g1387	614	PANTHER	BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN	1	610	-	-
	Lal15g1387	614	MobiDBLite	consensus disorder prediction	25	41	-	-
	Lal15g1387	614	PANTHER	BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN	1	610	-	-
	Lal15g1387	614	Gene3D	-	359	470	IPR036575	GO:0006351
	Lal15g1387	614	SMART	mid_6	381	478	IPR003618	GO:0006351
	Lal15g1387	614	MobiDBLite	consensus disorder prediction	592	614	-	-
	Lal15g1387	614	SUPERFAMILY	Elongation factor TFIIS domain 2	338	469	IPR036575	GO:0006351

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal15g1387	Lal-Chr15	16036581	16042374	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal15g1387	-		-	gmx:100787670	900.197

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal15g1387	15	16036581	16042374	Lal15g1387	15	16036581	16042374	ECH
	Lal23g1530	23	15447413	15453050	Lal15g1387	15	16036581	16042374	PCT